UHGV-0079371

Genome information

Genome length 36,515 bps

CDS count 64

Completeness 100.00% (complete)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079371
vOTU ID	vOTU-045150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152000
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.34
Jumbo phage	No

Genome content
Genome length	36,515 bps
GC content	31.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.74%
Average CDS length	514.55 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079371_1	PHROG	phrog_14105	NA	unknown function
UHGV-0079371_1	UniRef90	UniRef90_UPI0010B54E72	pentapeptide repeat-containing protein	NA
UHGV-0079371_1	eggNOG-mapper	268407.PWYN_12330	dextransucrase activity	NA
UHGV-0079371_1	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0079371_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0079371_1	Structural annotation	PF01469	NA	NA
UHGV-0079371_2	PHROG	phrog_11013	NA	unknown function
UHGV-0079371_2	UniRef90	UniRef90_UPI001F4C8907	DNA-entry nuclease	NA
UHGV-0079371_2	eggNOG-mapper	1444310.JANV01000162_gene1199	NA	NA
UHGV-0079371_3	Structural annotation	PF18895, NF040614, COG0713	NA	NA
UHGV-0079371_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0079371_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0079371_5	UniRef90	UniRef90_UPI000C079E58	phage antirepressor	NA
UHGV-0079371_5	eggNOG-mapper	1415774.U728_1712	Phage antirepressor protein KilAC domain	NA
UHGV-0079371_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0079371_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0079371_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0079371_5	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0079371_6	PHROG	phrog_7338	NA	unknown function
UHGV-0079371_6	UniRef90	UniRef90_A0A5C0SFH9	Helix-turn-helix domain-containing protein	NA
UHGV-0079371_6	eggNOG-mapper	931276.Cspa_c26540	Excisionase from transposon Tn916	NA
UHGV-0079371_6	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0079371_6	Structural annotation	PF09035, TIGR01764, COG3311	NA	NA
UHGV-0079371_7	UniRef90	UniRef90_UPI000EA0E616	helix-turn-helix domain-containing protein	NA
UHGV-0079371_7	eggNOG-mapper	1123239.KB898623_gene1335	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079371_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079371_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0079371_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0079371_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079371_8	UniRef90	UniRef90_UPI000EA2E30C	helix-turn-helix domain-containing protein	NA
UHGV-0079371_8	eggNOG-mapper	1122221.JHVI01000004_gene148	transcriptional regulator	NA
UHGV-0079371_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079371_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079371_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079371_9	KOfam	K14059	int; integrase	NA
UHGV-0079371_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0079371_9	UniRef90	UniRef90_UPI0015714504	site-specific integrase	NA
UHGV-0079371_9	eggNOG-mapper	857293.CAAU_0761	Belongs to the 'phage' integrase family	NA
UHGV-0079371_9	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0079371_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079371_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0079371_9	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0079371_11	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0079371_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079371_11	UniRef90	UniRef90_UPI000DCFF08B	helix-turn-helix domain-containing protein	NA
UHGV-0079371_11	eggNOG-mapper	1567011.A0A0A7RUJ5_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0079371_11	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0079371_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079371_11	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0079371_14	PHROG	phrog_942	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079371_14	UniRef90	UniRef90_W1I5W8	Uncultured bacterium plasmid pRGI01306	NA
UHGV-0079371_14	eggNOG-mapper	908340.HMPREF9406_1269	NA	NA
UHGV-0079371_14	Structural annotation	PF21578	NA	NA
UHGV-0079371_15	eggNOG-mapper	1211817.CCAT010000010_gene2301	ftsk spoiiie	NA
UHGV-0079371_15	Pfam	PF13173	AAA domain	AAA_14
UHGV-0079371_15	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0079371_18	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0079371_18	UniRef90	UniRef90_UPI001177DB72	helix-turn-helix domain-containing protein	NA
UHGV-0079371_18	eggNOG-mapper	1392491.JIAE01000001_gene152	NA	NA
UHGV-0079371_18	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0079371_18	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0079371_20	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0079371_20	PHROG	phrog_435	endolysin	lysis
UHGV-0079371_20	UniRef90	UniRef90_UPI000C0765B6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079371_20	eggNOG-mapper	1280689.AUJC01000011_gene1538	Cell wall hydrolase autolysin	NA
UHGV-0079371_20	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0079371_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079371_20	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0079371_21	PHROG	phrog_34399	NA	unknown function
UHGV-0079371_21	UniRef90	UniRef90_A0A0A2HDK2	Membrane protein	NA
UHGV-0079371_21	eggNOG-mapper	536232.CLM_1681	NA	NA
UHGV-0079371_23	PHROG	phrog_24267	NA	unknown function
UHGV-0079371_23	UniRef90	UniRef90_UPI000C07ED94	NA	NA
UHGV-0079371_23	eggNOG-mapper	764299.STRIC_1424	tail collar domain protein	NA
UHGV-0079371_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0079371_23	Structural annotation	PF10651, MF_04106, NF007636	NA	NA
UHGV-0079371_25	PHROG	phrog_7043	tail protein	tail
UHGV-0079371_25	UniRef90	UniRef90_UPI000EA2B1DE	phage tail protein	NA
UHGV-0079371_25	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0079371_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0079371_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0079371_25	COG	COG4926	Phage-related protein	NA
UHGV-0079371_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0079371_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0079371_26	UniRef90	UniRef90_A0A1C6KY20	Phage-related protein	NA
UHGV-0079371_26	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0079371_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-0079371_26	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0079371_27	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0079371_27	UniRef90	UniRef90_UPI001896A72F	phage tail protein	NA
UHGV-0079371_27	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0079371_27	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0079371_28	UniRef90	UniRef90_UPI001C0BFF51	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0079371_28	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0079371_28	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0079371_29	PHROG	phrog_706	NA	unknown function
UHGV-0079371_29	UniRef90	UniRef90_UPI001C608A27	Gp15 family bacteriophage protein	NA
UHGV-0079371_29	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0079371_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0079371_29	Structural annotation	PF06854	NA	NA
UHGV-0079371_30	PHROG	phrog_4450	NA	unknown function
UHGV-0079371_30	UniRef90	UniRef90_UPI0012B6DBEB	AP endonuclease	NA
UHGV-0079371_30	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0079371_30	Pfam	PF20378	NA	DUF6673
UHGV-0079371_30	Structural annotation	PF20378	NA	NA
UHGV-0079371_31	PHROG	phrog_3099	NA	unknown function
UHGV-0079371_31	eggNOG-mapper	573061.Clocel_3536	NA	NA
UHGV-0079371_31	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0079371_32	PHROG	phrog_3266	tail completion	connector
UHGV-0079371_32	UniRef90	UniRef90_A0A316MMH1	Chloramphenicol resistance protein	NA
UHGV-0079371_32	eggNOG-mapper	536233.CLO_1571	NA	NA
UHGV-0079371_32	Structural annotation	PF12691	NA	NA
UHGV-0079371_33	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0079371_33	UniRef90	UniRef90_A0A6B4JRR6	Capsid protein	NA
UHGV-0079371_33	eggNOG-mapper	536233.CLO_1570	Minor capsid protein	NA
UHGV-0079371_33	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0079371_34	PHROG	phrog_3366	NA	unknown function
UHGV-0079371_34	eggNOG-mapper	1540257.JQMW01000013_gene739	NA	NA
UHGV-0079371_34	Pfam	PF20536	NA	DUF6751
UHGV-0079371_35	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-0079371_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0079371_36	UniRef90	UniRef90_A0A3P6KSI0	NA	NA
UHGV-0079371_36	eggNOG-mapper	1415774.U728_1665	NA	NA
UHGV-0079371_36	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0079371_37	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0079371_37	UniRef90	UniRef90_UPI000C086442	NA	NA
UHGV-0079371_37	eggNOG-mapper	1415774.U728_1666	NA	NA
UHGV-0079371_37	Pfam	PF14265	NA	DUF4355
UHGV-0079371_37	Structural annotation	PF14265	NA	NA
UHGV-0079371_38	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0079371_38	UniRef90	UniRef90_A0A6B4THS1	Phage head morphogenesis protein	NA
UHGV-0079371_38	eggNOG-mapper	536233.CLO_1563	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0079371_38	COG	COG2369	NA	NA
UHGV-0079371_38	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0079371_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0079371_39	UniRef90	UniRef90_UPI000EA3F913	phage portal protein	NA
UHGV-0079371_39	eggNOG-mapper	536233.CLO_1562	portal protein, SPP1 Gp6-like	NA
UHGV-0079371_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079371_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0079371_40	PHROG	phrog_11978	NA	unknown function
UHGV-0079371_40	eggNOG-mapper	1391647.AVSV01000022_gene2555	TIGRFAM Phage	NA
UHGV-0079371_40	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0079371_40	COG	COG5362	Phage terminase large subunit	NA
UHGV-0079371_40	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0079371_42	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0079371_42	UniRef90	UniRef90_UPI000C0728F3	phBC6A51 family helix-turn-helix protein	NA
UHGV-0079371_42	eggNOG-mapper	1391647.AVSV01000022_gene2554	NA	NA
UHGV-0079371_42	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0079371_42	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0079371_44	PHROG	phrog_10157	NA	unknown function
UHGV-0079371_44	UniRef90	UniRef90_UPI000C076F29	helix-turn-helix domain-containing protein	NA
UHGV-0079371_44	eggNOG-mapper	536233.CLO_0875	Helix-turn-helix	NA
UHGV-0079371_44	Structural annotation	PF04545, MF_00674, NF009180, COG2771	NA	NA
UHGV-0079371_46	PHROG	phrog_236	nucleotide kinase	other
UHGV-0079371_46	UniRef90	UniRef90_UPI001A9A39DC	NA	NA
UHGV-0079371_46	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0079371_46	Pfam	PF11753	NA	DUF3310
UHGV-0079371_49	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079371_49	UniRef90	UniRef90_A0A290GHM3	Metallophos domain-containing protein	NA
UHGV-0079371_50	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0079371_50	UniRef90	UniRef90_UPI0018A8EF5C	ERCC4 domain-containing protein	NA
UHGV-0079371_50	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-0079371_50	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0079371_50	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0079371_52	PHROG	phrog_98	NA	unknown function
UHGV-0079371_52	UniRef90	UniRef90_UPI000C08CEB9	YopX family protein	NA
UHGV-0079371_52	eggNOG-mapper	1567011.A0A0A7RWK2_9VIRU	YopX protein	NA
UHGV-0079371_52	Pfam	PF09643	YopX protein	YopX
UHGV-0079371_52	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0079371_52	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0079371_54	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079371_54	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079371_54	UniRef90	UniRef90_UPI000C087C34	single-stranded DNA-binding protein	NA
UHGV-0079371_54	eggNOG-mapper	1391647.AVSV01000022_gene2534	Single-stranded DNA-binding protein	NA
UHGV-0079371_54	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079371_54	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0079371_54	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079371_54	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0079371_54	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0079371_57	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079371_57	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079371_57	UniRef90	UniRef90_A0A4Q0VED6	DNA helicase	NA
UHGV-0079371_57	eggNOG-mapper	180332.JTGN01000009_gene4317	Participates in initiation and elongation during chromosome replication	NA
UHGV-0079371_57	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0079371_57	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079371_57	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079371_57	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0079371_58	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0079371_58	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-0079371_58	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-0079371_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0079371_58	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0079371_59	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079371_59	UniRef90	UniRef90_UPI0016003DC3	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0079371_59	eggNOG-mapper	1415774.U728_1702	NA	NA
UHGV-0079371_59	Pfam	PF12684	NA	DUF3799
UHGV-0079371_59	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0079371_59	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0079371_60	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0079371_60	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079371_60	UniRef90	UniRef90_UPI0016029EDE	recombinase RecT	NA
UHGV-0079371_60	eggNOG-mapper	1499683.CCFF01000013_gene498	RecT family	NA
UHGV-0079371_60	Pfam	PF03837	RecT family	RecT
UHGV-0079371_60	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0079371_60	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0079371_60	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0079371_62	PHROG	phrog_10625	NA	unknown function
UHGV-0079371_62	Structural annotation	PF14634	NA	NA
UHGV-0079371_64	PHROG	phrog_14105	NA	unknown function
UHGV-0079371_64	UniRef90	UniRef90_UPI000EDA8FF8	pentapeptide repeat-containing protein	NA
UHGV-0079371_64	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0079371_64	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0079371_64	COG	COG5651	PPE-repeat protein	NA
UHGV-0079371_64	Structural annotation	PF01469	NA	NA