UHGV-0079372

Genome information

Genome length 39,765 bps

CDS count 52

Completeness 57.17% (medium-quality)

geNomad score 0.9665

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079372
vOTU ID	vOTU-026445
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151999
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9665
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79.19
Jumbo phage	No

Genome content
Genome length	39,765 bps
GC content	40.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.22%
Average CDS length	692.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079372_1	KOfam	K14059	int; integrase	NA
UHGV-0079372_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0079372_1	UniRef90	UniRef90_A0A6P1PE93	Tyrosine recombinase XerC	NA
UHGV-0079372_1	eggNOG-mapper	1423807.BACO01000050_gene1472	Belongs to the 'phage' integrase family	NA
UHGV-0079372_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0079372_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0079372_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079372_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0079372_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0079372_2	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0079372_2	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0079372_2	UniRef90	UniRef90_UPI0007BAFB1B	DNA adenine methylase	NA
UHGV-0079372_2	eggNOG-mapper	220668.lp_2454	DNA methyltransferase	NA
UHGV-0079372_2	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0079372_2	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0079372_2	COG	COG0338	DNA-adenine methylase	NA
UHGV-0079372_2	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0079372_3	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0079372_3	PHROG	phrog_3940	NA	unknown function
UHGV-0079372_3	UniRef90	UniRef90_UPI0007BB9D6A	AAA family ATPase	NA
UHGV-0079372_3	eggNOG-mapper	764291.STRUR_2128	AAA ATPase domain	NA
UHGV-0079372_3	PADLOC	AbiLi-1	AbiLi	Abi
UHGV-0079372_3	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0079372_3	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0079372_3	Structural annotation	PF11398, MF_00365, NF038234, COG3593	NA	NA
UHGV-0079372_4	eggNOG-mapper	1235801.C822_00421	NA	NA
UHGV-0079372_5	PHROG	phrog_87	metallo-protease	other
UHGV-0079372_5	UniRef90	UniRef90_UPI001CDC800A	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0079372_5	eggNOG-mapper	638301.HMPREF0444_1539	IrrE N-terminal-like domain	NA
UHGV-0079372_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0079372_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0079372_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0079372_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079372_6	UniRef90	UniRef90_A0A2P0ZLA1	HTH cro/C1-type domain-containing protein	NA
UHGV-0079372_6	eggNOG-mapper	1158610.UC3_02386	Helix-turn-helix XRE-family like proteins	NA
UHGV-0079372_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079372_6	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0079372_7	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079372_7	UniRef90	UniRef90_A0A0M0CIE4	Antirepressor	NA
UHGV-0079372_7	eggNOG-mapper	1302286.BAOT01000007_gene584	NA	NA
UHGV-0079372_7	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0079372_8	PHROG	phrog_5118	NA	unknown function
UHGV-0079372_8	UniRef90	UniRef90_UPI00162A4605	ribbon-helix-helix domain-containing protein	NA
UHGV-0079372_8	eggNOG-mapper	908337.HMPREF9257_0563	NA	NA
UHGV-0079372_9	PHROG	phrog_823	NA	unknown function
UHGV-0079372_9	UniRef90	UniRef90_UPI0010F5B616	NA	NA
UHGV-0079372_9	eggNOG-mapper	1400520.LFAB_05430	NA	NA
UHGV-0079372_9	Pfam	PF05595	NA	DUF771
UHGV-0079372_9	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0079372_9	Structural annotation	PF05595, COG4707	NA	NA
UHGV-0079372_10	PHROG	phrog_15098	NA	unknown function
UHGV-0079372_10	UniRef90	UniRef90_A0A151G9F2	NA	NA
UHGV-0079372_11	PHROG	phrog_22687	NA	unknown function
UHGV-0079372_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0079372_12	UniRef90	UniRef90_A0A151G8H9	RNA helicase	NA
UHGV-0079372_12	eggNOG-mapper	797515.HMPREF9103_02419	Siphovirus Gp157	NA
UHGV-0079372_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0079372_12	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0079372_13	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0079372_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0079372_13	UniRef90	UniRef90_A0A6P1PEN4	DNA repair helicase RadD	NA
UHGV-0079372_13	eggNOG-mapper	1567453.A0A0A1ENT0_9CAUD	helicase activity	NA
UHGV-0079372_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0079372_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0079372_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0079372_13	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0079372_14	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0079372_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079372_14	UniRef90	UniRef90_UPI0007C4A5DD	helix-turn-helix domain-containing protein	NA
UHGV-0079372_14	eggNOG-mapper	1121468.AUBR01000019_gene2612	Helix-turn-helix XRE-family like proteins	NA
UHGV-0079372_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079372_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079372_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079372_15	UniRef90	UniRef90_UPI000C7F9133	AAA family ATPase	NA
UHGV-0079372_15	eggNOG-mapper	1423815.BACR01000010_gene577	AAA domain	NA
UHGV-0079372_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0079372_15	COG	COG2887	RecB family exonuclease	NA
UHGV-0079372_15	Structural annotation	PF13479, MF_00348, TIGR01618, COG0468	NA	NA
UHGV-0079372_16	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079372_16	UniRef90	UniRef90_UPI0012E83695	NA	NA
UHGV-0079372_16	eggNOG-mapper	349123.Lreu23DRAFT_4227	NA	NA
UHGV-0079372_17	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0079372_17	UniRef90	UniRef90_A0A162EDE4	Phage replication protein	NA
UHGV-0079372_17	eggNOG-mapper	543734.LCABL_10980	Bifunctional DNA primase/polymerase, N-terminal	NA
UHGV-0079372_17	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0079372_17	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0079372_17	COG	COG5519	NA	NA
UHGV-0079372_17	Structural annotation	PF09250, PF08708, NF040561, COG4983	NA	NA
UHGV-0079372_18	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0079372_18	UniRef90	UniRef90_A0A151G8Q8	Helicase	NA
UHGV-0079372_18	eggNOG-mapper	1423755.BAML01000004_gene401	Virulence-associated protein E	NA
UHGV-0079372_18	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0079372_18	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0079372_18	Structural annotation	PF05272, MF_04000, NF011296, COG5545	NA	NA
UHGV-0079372_19	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0079372_19	UniRef90	UniRef90_A0A1E3KP25	VRR-NUC domain-containing protein	NA
UHGV-0079372_19	eggNOG-mapper	1108070.G8FV07_9CAUD	hydrolase activity, acting on ester bonds	NA
UHGV-0079372_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0079372_19	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0079372_20	PHROG	phrog_32922	NA	unknown function
UHGV-0079372_20	UniRef90	UniRef90_A0A165R6A8	Prophage Lp2 protein 25	NA
UHGV-0079372_20	eggNOG-mapper	1400520.LFAB_09175	NA	NA
UHGV-0079372_21	UniRef90	UniRef90_A0A1E3KQ17	Endoplasmic reticulum-based factor for assembly of V-ATPase	NA
UHGV-0079372_22	PHROG	phrog_98	NA	unknown function
UHGV-0079372_22	UniRef90	UniRef90_UPI0007BC5D76	YopX family protein	NA
UHGV-0079372_22	eggNOG-mapper	797515.HMPREF9103_02492	YopX protein	NA
UHGV-0079372_22	Pfam	PF09643	YopX protein	YopX
UHGV-0079372_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0079372_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0079372_23	PHROG	phrog_419	NA	unknown function
UHGV-0079372_23	UniRef90	UniRef90_UPI001B82C862	NA	NA
UHGV-0079372_23	eggNOG-mapper	947981.E9LUP3_9CAUD	NA	NA
UHGV-0079372_23	Pfam	PF07852	NA	DUF1642
UHGV-0079372_23	Structural annotation	PF07852	NA	NA
UHGV-0079372_24	UniRef90	UniRef90_A0A165NQY1	Prophage Lp1 protein 32	NA
UHGV-0079372_24	eggNOG-mapper	220668.lp_0655	NA	NA
UHGV-0079372_25	PHROG	phrog_27493	NA	unknown function
UHGV-0079372_25	UniRef90	UniRef90_A0A809NMD8	NA	NA
UHGV-0079372_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0079372_26	UniRef90	UniRef90_A0A8G0ZHT5	NA	NA
UHGV-0079372_26	eggNOG-mapper	1423775.BAMN01000011_gene611	NA	NA
UHGV-0079372_26	Structural annotation	PF07374, MF_00674, NF001066, COG2739	NA	NA
UHGV-0079372_28	UniRef90	UniRef90_UPI0007B545C3	NA	NA
UHGV-0079372_29	PHROG	phrog_23649	NA	unknown function
UHGV-0079372_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0079372_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079372_30	UniRef90	UniRef90_UPI001AAF395E	HNH endonuclease	NA
UHGV-0079372_30	eggNOG-mapper	1158610.UC3_02358	HNH nucleases	NA
UHGV-0079372_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0079372_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0079372_30	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0079372_31	PHROG	phrog_17806	NA	unknown function
UHGV-0079372_31	UniRef90	UniRef90_A0A2P0ZLD3	Diaminopimelate decarboxylase	NA
UHGV-0079372_32	PHROG	phrog_26486	NA	unknown function
UHGV-0079372_32	UniRef90	UniRef90_A0A162F758	NA	NA
UHGV-0079372_33	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-0079372_33	UniRef90	UniRef90_A0A165P5Q7	NA	NA
UHGV-0079372_33	eggNOG-mapper	1497679.EP56_02220	NA	NA
UHGV-0079372_33	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0079372_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0079372_34	UniRef90	UniRef90_A0A151G8U6	Terminase	NA
UHGV-0079372_34	eggNOG-mapper	1423816.BACQ01000026_gene945	Phage Terminase	NA
UHGV-0079372_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0079372_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0079372_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0079372_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0079372_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0079372_35	UniRef90	UniRef90_A0A151G8H6	Phage portal protein	NA
UHGV-0079372_35	eggNOG-mapper	1158614.I592_00620	Phage portal protein	NA
UHGV-0079372_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0079372_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0079372_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0079372_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0079372_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0079372_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0079372_36	UniRef90	UniRef90_A0A1E3KRD5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0079372_36	eggNOG-mapper	1158610.UC3_02352	Clp protease	NA
UHGV-0079372_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0079372_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0079372_36	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0079372_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0079372_37	UniRef90	UniRef90_A0A2P0ZLD6	Major capsid protein	NA
UHGV-0079372_37	eggNOG-mapper	1122147.AUEH01000027_gene2745	Phage capsid family	NA
UHGV-0079372_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0079372_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0079372_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0079372_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0079372_38	PHROG	phrog_749	NA	unknown function
UHGV-0079372_38	UniRef90	UniRef90_UPI00097E4236	phage gp6-like head-tail connector protein	NA
UHGV-0079372_38	eggNOG-mapper	999425.HMPREF9186_02036	NA	NA
UHGV-0079372_39	UniRef90	UniRef90_A0A2P0ZLD1	FkbH	NA
UHGV-0079372_39	eggNOG-mapper	565653.EGBG_01972	NA	NA
UHGV-0079372_39	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0079372_40	UniRef90	UniRef90_A0A0A1GTA7	Gp9 protein	NA
UHGV-0079372_40	eggNOG-mapper	1423816.BACQ01000026_gene939	NA	NA
UHGV-0079372_40	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0079372_41	PHROG	phrog_78	tail terminator	connector
UHGV-0079372_41	UniRef90	UniRef90_A0A7Z9DHX8	Gp10 family protein	NA
UHGV-0079372_41	eggNOG-mapper	1140001.I571_01750	NA	NA
UHGV-0079372_41	Structural annotation	PF05657	NA	NA
UHGV-0079372_42	PHROG	phrog_88	major tail protein	tail
UHGV-0079372_42	UniRef90	UniRef90_A0A165DF72	Phage major tail protein	NA
UHGV-0079372_42	eggNOG-mapper	1122147.AUEH01000027_gene2740	Phage tail tube protein	NA
UHGV-0079372_42	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0079372_42	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0079372_42	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0079372_43	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0079372_43	UniRef90	UniRef90_A0A2P0ZLF3	ATP-dependent DNA helicase	NA
UHGV-0079372_43	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0079372_44	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0079372_44	UniRef90	UniRef90_A0A165P5K0	Phage tail length tape-measure protein	NA
UHGV-0079372_44	eggNOG-mapper	1122147.AUEH01000027_gene2737	Phage tail tape measure protein TP901	NA
UHGV-0079372_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0079372_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0079372_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0079372_44	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0079372_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0079372_45	UniRef90	UniRef90_A0A165P5J4	NA	NA
UHGV-0079372_45	eggNOG-mapper	46256.BBIK01000004_gene702	Phage tail protein	NA
UHGV-0079372_45	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0079372_46	PHROG	phrog_1330	tail protein	tail
UHGV-0079372_46	UniRef90	UniRef90_UPI0007BB01CE	phage tail protein	NA
UHGV-0079372_46	eggNOG-mapper	46256.BBIK01000004_gene703	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	NA
UHGV-0079372_46	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0079372_46	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0079372_46	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA
UHGV-0079372_46	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0079372_47	PHROG	phrog_1401	NA	unknown function
UHGV-0079372_47	UniRef90	UniRef90_UPI00106586E6	NA	NA
UHGV-0079372_47	eggNOG-mapper	60520.HR47_13405	NA	NA
UHGV-0079372_47	Pfam	PF07761	NA	DUF1617
UHGV-0079372_47	Structural annotation	PF07761	NA	NA
UHGV-0079372_48	PHROG	phrog_19261	NA	unknown function
UHGV-0079372_49	PHROG	phrog_11342	NA	unknown function
UHGV-0079372_49	eggNOG-mapper	1400520.LFAB_05310	NA	NA
UHGV-0079372_51	PHROG	phrog_1129	holin	lysis
UHGV-0079372_51	UniRef90	UniRef90_UPI0010F4BB18	lysis protein	NA
UHGV-0079372_51	eggNOG-mapper	1329250.WOSG25_260100	Bacteriophage A118-like holin, Hol118	NA
UHGV-0079372_51	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0079372_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0079372_52	PHROG	phrog_291	endolysin	lysis
UHGV-0079372_52	UniRef90	UniRef90_A0A2S3U2V9	SH3b domain-containing protein	NA
UHGV-0079372_52	eggNOG-mapper	1400520.LFAB_05325	Glycosyl hydrolases family 25	NA
UHGV-0079372_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0079372_52	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0079372_52	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0079372_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA