UHGV-0079526

Genome information

Genome length 38,273 bps

CDS count 56

Completeness 75.05% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079526
vOTU ID	vOTU-036576
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149449
BioSample	SAMEA2784505
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.38
Jumbo phage	No

Genome content
Genome length	38,273 bps
GC content	45.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.67%
Average CDS length	639.86 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079526_2	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0079526_2	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0079526_2	UniRef90	UniRef90_A0A316P160	DNA polymerase I (Fragment)	NA
UHGV-0079526_2	eggNOG-mapper	1340829.S5Y5D9_9CAUD	DNA polymerase family A	NA
UHGV-0079526_2	PADLOC	drt-cluster58	DRT	DRT
UHGV-0079526_2	Pfam	PF03167	Uracil DNA glycosylase superfamily	UDG
UHGV-0079526_2	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0079526_2	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0079526_2	Structural annotation	PF00476, PF03167, PF01612, MF_04101, MF_01956, NF004397, COG0749, COG1573	NA	NA
UHGV-0079526_3	UniRef90	UniRef90_G4L0Y7	zf-trcl domain-containing protein	NA
UHGV-0079526_3	eggNOG-mapper	693746.OBV_43580	Probable zinc-ribbon domain	NA
UHGV-0079526_3	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0079526_3	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0079526_4	KOfam	K16899	addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]	NA
UHGV-0079526_4	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079526_4	UniRef90	UniRef90_A0A5H2TJR6	PDDEXK_1 domain-containing protein	NA
UHGV-0079526_4	eggNOG-mapper	706587.Desti_3464	PD-(D/E)XK nuclease superfamily	NA
UHGV-0079526_4	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0079526_4	COG	COG2887	RecB family exonuclease	NA
UHGV-0079526_4	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0079526_5	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079526_5	UniRef90	UniRef90_A0A1L6BY46	Nucleotide-binding protein	NA
UHGV-0079526_5	eggNOG-mapper	357276.EL88_08510	AAA domain	NA
UHGV-0079526_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0079526_5	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0079526_5	Structural annotation	PF13479, MF_00350, TIGR01618, COG2874	NA	NA
UHGV-0079526_6	PHROG	phrog_3724	NA	unknown function
UHGV-0079526_6	Pfam	PF05037	NA	DUF669
UHGV-0079526_6	Pfam	PF02037	SAP domain	SAP
UHGV-0079526_7	UniRef90	UniRef90_A0A5H2TVW2	VRR-NUC domain-containing protein	NA
UHGV-0079526_7	eggNOG-mapper	1235835.C814_01172	phosphatase activity	NA
UHGV-0079526_7	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0079526_8	PHROG	phrog_1485	NA	unknown function
UHGV-0079526_8	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0079526_9	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0079526_9	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0079526_9	UniRef90	UniRef90_A0A1L6BY27	Helicase	NA
UHGV-0079526_9	eggNOG-mapper	935948.KE386495_gene1203	SNF2 family N-terminal domain	NA
UHGV-0079526_9	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0079526_9	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0079526_9	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0079526_9	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0079526_9	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0079526_12	PHROG	phrog_33386	NA	unknown function
UHGV-0079526_12	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0079526_13	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0079526_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0079526_16	PHROG	phrog_16490	NA	unknown function
UHGV-0079526_16	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0079526_17	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0079526_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0079526_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0079526_19	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0079526_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0079526_19	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0079526_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0079526_22	PHROG	phrog_435	endolysin	lysis
UHGV-0079526_22	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0079526_22	eggNOG-mapper	994573.T472_0211265	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0079526_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0079526_22	Pfam	PF05036	SPOR domain	SPOR
UHGV-0079526_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079526_22	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0079526_23	PHROG	phrog_881	holin	lysis
UHGV-0079526_23	UniRef90	UniRef90_A0A317M6V7	Dp-1 family holin	NA
UHGV-0079526_23	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0079526_23	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0079526_23	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0079526_24	PHROG	phrog_372	tail protein	tail
UHGV-0079526_24	UniRef90	UniRef90_A0A1C7G3H3	Pilus assembly protein	NA
UHGV-0079526_24	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0079526_24	Pfam	PF05895	NA	DUF859
UHGV-0079526_24	COG	COG4675	Phage tail collar domain	NA
UHGV-0079526_24	Structural annotation	PF05895, MF_04116, NF010681, COG1361	NA	NA
UHGV-0079526_25	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0079526_25	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0079526_25	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0079526_25	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0079526_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0079526_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0079526_25	COG	COG4926	Phage-related protein	NA
UHGV-0079526_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0079526_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0079526_26	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0079526_26	eggNOG-mapper	1121342.AUCO01000004_gene648	tail component	NA
UHGV-0079526_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-0079526_26	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0079526_27	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0079526_27	UniRef90	UniRef90_A0A3E3ILY3	Phage tail tape measure protein	NA
UHGV-0079526_27	eggNOG-mapper	1321782.HMPREF1986_01369	Phage tail tape measure protein, TP901 family	NA
UHGV-0079526_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0079526_27	Pfam	PF04691	Apolipoprotein C-I (ApoC-1)	ApoC-I
UHGV-0079526_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0079526_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0079526_27	Structural annotation	PF10145, MF_04138, TIGR01760	NA	NA
UHGV-0079526_28	PHROG	phrog_6541	NA	unknown function
UHGV-0079526_28	eggNOG-mapper	332101.JIBU02000023_gene4727	NA	NA
UHGV-0079526_29	PHROG	phrog_6280	NA	unknown function
UHGV-0079526_29	UniRef90	UniRef90_UPI001C0E35E9	esterase	NA
UHGV-0079526_29	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0079526_30	PHROG	phrog_6686	tail tube protein	tail
UHGV-0079526_30	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0079526_30	eggNOG-mapper	871584.D9ZNE2_9CAUD	NA	NA
UHGV-0079526_30	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0079526_31	PHROG	phrog_7585	NA	unknown function
UHGV-0079526_31	eggNOG-mapper	1304880.JAGB01000002_gene2212	NA	NA
UHGV-0079526_31	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0079526_32	UniRef90	UniRef90_UPI00164BA869	HK97 gp10 family phage protein	NA
UHGV-0079526_32	eggNOG-mapper	580331.Thit_1383	NA	NA
UHGV-0079526_32	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0079526_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0079526_34	PHROG	phrog_4020	NA	unknown function
UHGV-0079526_34	eggNOG-mapper	1121342.AUCO01000012_gene1692	NA	NA
UHGV-0079526_35	Structural annotation	PF07498	NA	NA
UHGV-0079526_36	PHROG	phrog_29	major head protein	head and packaging
UHGV-0079526_36	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0079526_36	eggNOG-mapper	756499.Desde_1083	Phage major capsid protein E	NA
UHGV-0079526_36	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0079526_36	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0079526_37	PHROG	phrog_909	major head protein	head and packaging
UHGV-0079526_37	UniRef90	UniRef90_UPI000DFA22F7	head decoration protein	NA
UHGV-0079526_37	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0079526_37	Structural annotation	PF02924	NA	NA
UHGV-0079526_38	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0079526_38	eggNOG-mapper	986075.CathTA2_2461	NA	NA
UHGV-0079526_40	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0079526_40	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0079526_40	eggNOG-mapper	536233.CLO_0535	NA	NA
UHGV-0079526_40	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0079526_42	PHROG	phrog_13589	NA	unknown function
UHGV-0079526_42	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-0079526_43	PHROG	phrog_31538	NA	unknown function
UHGV-0079526_44	Structural annotation	PF08481, NF033814, COG2372	NA	NA
UHGV-0079526_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0079526_45	UniRef90	UniRef90_UPI0008331C88	phage portal protein	NA
UHGV-0079526_45	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0079526_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079526_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0079526_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0079526_46	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0079526_46	UniRef90	UniRef90_UPI00101D64CF	PBSX family phage terminase large subunit	NA
UHGV-0079526_46	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0079526_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0079526_46	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0079526_46	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0079526_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0079526_46	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0079526_47	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0079526_47	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0079526_47	UniRef90	UniRef90_A0A6H0TMZ4	Terminase small subunit	NA
UHGV-0079526_47	eggNOG-mapper	552525.B5LPQ9_9CAUD	Terminase small subunit	NA
UHGV-0079526_47	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0079526_47	Structural annotation	PF03592, PF06056, NF040601, COG3728	NA	NA
UHGV-0079526_49	PHROG	phrog_6072	NA	unknown function
UHGV-0079526_53	PHROG	phrog_33402	NA	unknown function
UHGV-0079526_54	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0079526_54	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0079526_54	UniRef90	UniRef90_A0A101DYL2	dCMP deaminase, putative	NA
UHGV-0079526_54	eggNOG-mapper	224325.AF_1764	PFAM CMP dCMP deaminase zinc-binding	NA
UHGV-0079526_54	PADLOC	dCTPase	NA	NA
UHGV-0079526_54	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0079526_54	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0079526_54	Structural annotation	PF00383, MF_00972, TIGR02571, COG2131	NA	NA