UHGV-0079694

Genome information

Genome length 51,563 bps

CDS count 92

Completeness 100.00% (complete)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079694
vOTU ID	vOTU-045156
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_148951
BioSample	SAMEA2784510
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.71
Jumbo phage	No

Genome content
Genome length	51,563 bps
GC content	49.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	92
CDS density	88.53%
Average CDS length	501.13 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079694_1	PHROG	phrog_5070	NA	unknown function
UHGV-0079694_1	UniRef90	UniRef90_A0A412PKE0	Polymer-forming cytoskeletal protein (Fragment)	NA
UHGV-0079694_1	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0079694_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0079694_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0079694_2	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0079694_2	UniRef90	UniRef90_UPI000A0213FB	helix-turn-helix domain-containing protein	NA
UHGV-0079694_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0079694_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0079694_3	UniRef90	UniRef90_B1BTE7	Conserved domain protein	NA
UHGV-0079694_5	Structural annotation	PF04325	NA	NA
UHGV-0079694_6	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0079694_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0079694_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079694_7	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0079694_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079694_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0079694_11	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0079694_11	UniRef90	UniRef90_A0A353EYT4	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0079694_11	eggNOG-mapper	1297570.MESS4_450005	HicB family	NA
UHGV-0079694_11	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0079694_11	Structural annotation	PF21748, COG4226	NA	NA
UHGV-0079694_12	UniRef90	UniRef90_UPI001966EB25	NA	NA
UHGV-0079694_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079694_15	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079694_16	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0079694_16	PHROG	phrog_8049	NA	unknown function
UHGV-0079694_16	eggNOG-mapper	927704.SELR_26510	NA	NA
UHGV-0079694_17	KOfam	K14059	int; integrase	NA
UHGV-0079694_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0079694_17	UniRef90	UniRef90_UPI0018989279	site-specific integrase	NA
UHGV-0079694_17	eggNOG-mapper	1514668.JOOA01000001_gene661	Belongs to the 'phage' integrase family	NA
UHGV-0079694_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079694_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0079694_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0079694_19	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0079694_19	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0079694_21	PHROG	phrog_20016	NA	unknown function
UHGV-0079694_21	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0079694_21	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0079694_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0079694_22	PHROG	phrog_16490	NA	unknown function
UHGV-0079694_22	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0079694_23	PHROG	phrog_1129	holin	lysis
UHGV-0079694_23	UniRef90	UniRef90_A0A3R5ZDU6	Holin	NA
UHGV-0079694_23	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0079694_23	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0079694_23	Structural annotation	PF06946	NA	NA
UHGV-0079694_24	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0079694_24	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0079694_25	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0079694_25	PHROG	phrog_7698	endolysin	lysis
UHGV-0079694_25	UniRef90	UniRef90_A0A7X9C394	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA
UHGV-0079694_25	eggNOG-mapper	877414.ATWA01000019_gene2055	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0079694_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0079694_25	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0079694_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079694_25	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0079694_27	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0079694_27	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0079694_28	Structural annotation	PF10651	NA	NA
UHGV-0079694_30	PHROG	phrog_18444	NA	unknown function
UHGV-0079694_30	UniRef90	UniRef90_A0A7X5CHF3	Peptide chain release factor 2	NA
UHGV-0079694_30	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0079694_31	PHROG	phrog_18190	NA	unknown function
UHGV-0079694_31	eggNOG-mapper	411471.SUBVAR_06932	NA	NA
UHGV-0079694_31	Structural annotation	PF05954, PF00629, PF03424, NF033848, NF033675, COG4379	NA	NA
UHGV-0079694_32	PHROG	phrog_1194	NA	unknown function
UHGV-0079694_32	Structural annotation	PF20458, TIGR02126, COG4718	NA	NA
UHGV-0079694_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0079694_33	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0079694_33	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0079694_34	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0079694_35	UniRef90	UniRef90_UPI00041AF7E2	NA	NA
UHGV-0079694_35	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0079694_35	Pfam	PF16478	NA	DUF5055
UHGV-0079694_35	Structural annotation	PF16478	NA	NA
UHGV-0079694_36	UniRef90	UniRef90_R6HYI8	Major tail protein putative	NA
UHGV-0079694_36	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0079694_37	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0079694_38	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0079694_39	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0079694_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0079694_40	UniRef90	UniRef90_UPI000F546010	phage head-tail connector protein	NA
UHGV-0079694_40	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0079694_40	Structural annotation	TIGR01560	NA	NA
UHGV-0079694_42	PHROG	phrog_29	major head protein	head and packaging
UHGV-0079694_42	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0079694_42	eggNOG-mapper	1232453.BAIF02000058_gene1628	Phage major capsid protein E	NA
UHGV-0079694_42	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0079694_42	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0079694_45	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0079694_45	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0079694_45	eggNOG-mapper	1121451.DESAM_10288	head morphogenesis protein, SPP1 gp7	NA
UHGV-0079694_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0079694_45	COG	COG2369	NA	NA
UHGV-0079694_45	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0079694_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0079694_46	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0079694_46	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0079694_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079694_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0079694_48	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0079694_48	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0079694_48	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0079694_48	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0079694_48	COG	COG5410	NA	NA
UHGV-0079694_48	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0079694_49	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079694_49	UniRef90	UniRef90_UPI000F544BE5	AP2 domain-containing protein	NA
UHGV-0079694_49	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0079694_50	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0079694_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079694_50	eggNOG-mapper	1121012.AUKX01000034_gene617	Helix-turn-helix domain	NA
UHGV-0079694_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0079694_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079694_50	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079694_55	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0079694_57	Structural annotation	PF16677	NA	NA
UHGV-0079694_58	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0079694_58	PHROG	phrog_18293	methyltransferase	other
UHGV-0079694_58	UniRef90	UniRef90_A0A1C6BYZ5	Modification methylase DpnIIB	NA
UHGV-0079694_58	eggNOG-mapper	445688.E3SNH3_9CAUD	N-methyltransferase activity	NA
UHGV-0079694_58	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0079694_58	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0079694_59	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0079694_59	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0079694_59	UniRef90	UniRef90_UPI001873736C	dUTP diphosphatase	NA
UHGV-0079694_59	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0079694_59	Pfam	PF00692	dUTPase	dUTPase
UHGV-0079694_59	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0079694_59	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0079694_59	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0079694_66	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079694_66	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-0079694_66	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-0079694_69	PHROG	phrog_9958	NA	unknown function
UHGV-0079694_69	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0079694_69	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0079694_69	Structural annotation	PF19789	NA	NA
UHGV-0079694_72	KOfam	K06940	NA	NA
UHGV-0079694_72	PHROG	phrog_32498	NA	unknown function
UHGV-0079694_72	UniRef90	UniRef90_A0A1W7ABU4	Flagellin N-methylase	NA
UHGV-0079694_72	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0079694_72	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0079694_72	Structural annotation	PF03692	NA	NA
UHGV-0079694_75	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0079694_75	UniRef90	UniRef90_A0A349YFI2	DNA cytosine methyltransferase	NA
UHGV-0079694_75	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0079694_75	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0079694_76	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0079694_76	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0079694_76	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0079694_76	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0079694_78	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0079694_78	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0079694_78	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0079694_78	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0079694_78	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0079694_78	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0079694_78	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0079694_80	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079694_80	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079694_80	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0079694_80	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0079694_80	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0079694_80	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079694_80	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079694_80	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0079694_81	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079694_81	UniRef90	UniRef90_UPI001F1B43AF	GntR family transcriptional regulator	NA
UHGV-0079694_81	eggNOG-mapper	97139.C824_02821	NA	NA
UHGV-0079694_81	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0079694_82	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079694_82	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079694_82	UniRef90	UniRef90_A0A354L2I3	Single-stranded DNA-binding protein	NA
UHGV-0079694_82	eggNOG-mapper	657322.FPR_24250	Single-stranded DNA-binding protein	NA
UHGV-0079694_82	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079694_82	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0079694_82	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079694_82	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0079694_82	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0079694_83	PHROG	phrog_7566	NA	unknown function
UHGV-0079694_83	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0079694_84	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0079694_84	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0079694_84	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0079694_84	Structural annotation	PF05772	NA	NA
UHGV-0079694_85	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079694_85	UniRef90	UniRef90_A0A7X7UVS4	ERF family protein	NA
UHGV-0079694_85	eggNOG-mapper	585502.HMPREF0645_2601	Erf family	NA
UHGV-0079694_85	Pfam	PF04404	ERF superfamily	ERF
UHGV-0079694_85	Structural annotation	PF04404, TIGR00607, COG5468	NA	NA
UHGV-0079694_91	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0079694_91	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0079694_91	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0079694_91	eggNOG-mapper	910313.HMPREF9320_0936	BRO family, N-terminal domain	NA
UHGV-0079694_91	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0079694_91	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0079694_91	COG	COG3617	Prophage antirepressor	NA
UHGV-0079694_91	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0079694_92	PHROG	phrog_20532	NA	unknown function
UHGV-0079694_92	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0079694_92	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA