UHGV-0079752

Genome information

Genome length 35,001 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9542

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079752
vOTU ID	vOTU-005466
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_140115
BioSample	SAMEA2737701
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9542
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.92
Jumbo phage	No

Genome content
Genome length	35,001 bps
GC content	46.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.50%
Average CDS length	577.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079752_4	PHROG	phrog_267	major head protein	head and packaging
UHGV-0079752_4	UniRef90	UniRef90_A0A353QSS2	P22 coat protein-protein 5 domain protein	NA
UHGV-0079752_4	eggNOG-mapper	877414.ATWA01000001_gene909	P22 coat protein-protein 5 domain protein	NA
UHGV-0079752_4	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0079752_6	Structural annotation	PF20387	NA	NA
UHGV-0079752_7	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0079752_11	PHROG	phrog_2563	NA	unknown function
UHGV-0079752_11	eggNOG-mapper	264201.pc1903	NA	NA
UHGV-0079752_13	Pfam	PF00754	F5/8 type C domain	F5_F8_type_C
UHGV-0079752_16	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0079752_16	UniRef90	UniRef90_UPI001D123344	phage tail assembly chaperone	NA
UHGV-0079752_16	eggNOG-mapper	1009370.ALO_01674	NA	NA
UHGV-0079752_16	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0079752_16	Structural annotation	PF16778	NA	NA
UHGV-0079752_22	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0079752_22	PHROG	phrog_938	endolysin	lysis
UHGV-0079752_22	UniRef90	UniRef90_A0A1Q6UEV9	Hydrolase_2 domain-containing protein	NA
UHGV-0079752_22	eggNOG-mapper	1177928.TH2_09464	Cell Wall Hydrolase	NA
UHGV-0079752_22	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0079752_22	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0079752_22	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0079752_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0079752_28	PHROG	phrog_95	integrase	integration and excision
UHGV-0079752_28	UniRef90	UniRef90_A0A356F6B9	Recombinase domain-containing protein (Fragment)	NA
UHGV-0079752_28	eggNOG-mapper	1437425.CSEC_0908	Resolvase, N terminal domain	NA
UHGV-0079752_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0079752_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-0079752_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0079752_28	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0079752_30	Structural annotation	PF11195	NA	NA
UHGV-0079752_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0079752_41	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-0079752_41	eggNOG-mapper	445972.ANACOL_00147	NA	NA
UHGV-0079752_41	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0079752_42	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079752_42	UniRef90	UniRef90_A0A0J6CI38	DNA-binding protein	NA
UHGV-0079752_42	eggNOG-mapper	1122931.AUAE01000005_gene3279	AAA domain	NA
UHGV-0079752_42	Pfam	PF13479	AAA domain	AAA_24
UHGV-0079752_42	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0079752_42	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0079752_45	PHROG	phrog_9243	NA	unknown function
UHGV-0079752_45	UniRef90	UniRef90_A0A522X4M9	NA	NA
UHGV-0079752_45	eggNOG-mapper	1219045.BV98_002202	NA	NA
UHGV-0079752_45	Pfam	PF12686	NA	DUF3800
UHGV-0079752_45	Structural annotation	MF_00052_A, NF011119	NA	NA
UHGV-0079752_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0079752_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0079752_46	UniRef90	UniRef90_A0A3D5BAV1	Peptidase_S24 domain-containing protein	NA
UHGV-0079752_46	eggNOG-mapper	314225.ELI_08650	Transcriptional regulator	NA
UHGV-0079752_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0079752_46	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0079752_46	Structural annotation	PF13443, PF16452, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0079752_47	UniRef90	UniRef90_A0A7X6BGZ5	2,4-dienoyl-CoA reductase-like NADH-dependent reductase (Old Yellow Enzyme family)	NA
UHGV-0079752_47	eggNOG-mapper	383381.EH30_08500	NA	NA
UHGV-0079752_47	Structural annotation	PF02376, NF040507, COG4800	NA	NA
UHGV-0079752_48	PHROG	phrog_6576	NA	unknown function
UHGV-0079752_48	eggNOG-mapper	626418.bglu_1g15300	Ftsk_gamma	NA
UHGV-0079752_48	COG	COG2916	DNA-binding protein H-NS	NA
UHGV-0079752_49	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0079752_49	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0079752_49	UniRef90	UniRef90_UPI0007B6BBA1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0079752_49	eggNOG-mapper	1129145.H2BD71_9CAUD	magnesium ion binding	NA
UHGV-0079752_49	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0079752_49	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0079752_50	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079752_51	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079752_51	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079752_51	UniRef90	UniRef90_UPI0018674E97	replicative DNA helicase	NA
UHGV-0079752_51	eggNOG-mapper	1192868.CAIU01000007_gene815	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0079752_51	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079752_51	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079752_51	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0079752_53	UniRef90	UniRef90_A0A1Q6U9D6	NA	NA
UHGV-0079752_55	PHROG	phrog_4102	terminase small subunit	head and packaging
UHGV-0079752_55	UniRef90	UniRef90_A0A5Q2W2N5	Terminase small subunit	NA
UHGV-0079752_55	Structural annotation	PF07141	NA	NA
UHGV-0079752_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0079752_56	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0079752_56	UniRef90	UniRef90_A0A1Q6UF23	Terminase_3 domain-containing protein	NA
UHGV-0079752_56	eggNOG-mapper	1267535.KB906767_gene2463	phage Terminase large subunit	NA
UHGV-0079752_56	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0079752_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0079752_56	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0079752_57	UniRef90	UniRef90_K2EAN5	Portal protein	NA