UHGV-0079850

Genome information

Genome length 30,045 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079850
vOTU ID	vOTU-045161
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152346
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	5
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.47
Jumbo phage	No

Genome content
Genome length	30,045 bps
GC content	60.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.21%
Average CDS length	561.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079850_1	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0079850_1	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0079850_1	UniRef90	UniRef90_A0A2N2CMQ6	AAA_31 domain-containing protein	NA
UHGV-0079850_1	eggNOG-mapper	411463.EUBVEN_00461	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-0079850_1	Pfam	PF13614	AAA domain	AAA_31
UHGV-0079850_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0079850_1	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0079850_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0079850_2	PHROG	phrog_27290	NA	unknown function
UHGV-0079850_2	UniRef90	UniRef90_A0A3D1VH09	ParB domain-containing protein	NA
UHGV-0079850_2	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0079850_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0079850_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0079850_2	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0079850_3	PHROG	phrog_3777	NA	unknown function
UHGV-0079850_3	UniRef90	UniRef90_UPI001D08CA4B	NA	NA
UHGV-0079850_3	eggNOG-mapper	665956.HMPREF1032_02664	NA	NA
UHGV-0079850_3	Pfam	PF12957	NA	DUF3846
UHGV-0079850_3	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0079850_3	Structural annotation	PF12957	NA	NA
UHGV-0079850_4	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0079850_4	eggNOG-mapper	1280673.AUJJ01000020_gene1343	Nucleotidyltransferase domain	NA
UHGV-0079850_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0079850_4	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0079850_4	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0079850_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079850_6	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0079850_6	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0079850_7	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0079850_8	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079850_8	UniRef90	UniRef90_E7FQH8	HNH endonuclease domain protein	NA
UHGV-0079850_8	eggNOG-mapper	1423775.BAMN01000011_gene610	HNH nucleases	NA
UHGV-0079850_8	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0079850_8	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0079850_8	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0079850_9	PHROG	phrog_104	portal protein	head and packaging
UHGV-0079850_9	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-0079850_9	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0079850_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0079850_10	PHROG	phrog_7104	NA	unknown function
UHGV-0079850_10	eggNOG-mapper	665950.HMPREF1025_02536	NA	NA
UHGV-0079850_11	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0079850_11	UniRef90	UniRef90_J5WFW3	CdiA_C domain-containing protein	NA
UHGV-0079850_11	eggNOG-mapper	936375.HMPREF1152_0675	NA	NA
UHGV-0079850_11	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0079850_11	Structural annotation	PF18451, TIGR01641	NA	NA
UHGV-0079850_12	PHROG	phrog_17688	NA	unknown function
UHGV-0079850_12	UniRef90	UniRef90_UPI001960D3D4	terminase large subunit	NA
UHGV-0079850_12	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0079850_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0079850_12	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0079850_13	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0079850_13	UniRef90	UniRef90_A0A2S0L5H5	Phage scaffold protein	NA
UHGV-0079850_13	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0079850_13	Pfam	PF14265	NA	DUF4355
UHGV-0079850_14	PHROG	phrog_32396	NA	unknown function
UHGV-0079850_14	UniRef90	UniRef90_UPI00189E3B76	phage major capsid protein	NA
UHGV-0079850_14	eggNOG-mapper	1321784.HMPREF1987_01073	Phage capsid family	NA
UHGV-0079850_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0079850_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0079850_15	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0079850_15	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0079850_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0079850_15	Structural annotation	PF12733	NA	NA
UHGV-0079850_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0079850_16	UniRef90	UniRef90_J5WG12	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0079850_16	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0079850_16	Pfam	PF09355	NA	Phage_Gp19
UHGV-0079850_16	Structural annotation	PF09355	NA	NA
UHGV-0079850_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0079850_17	UniRef90	UniRef90_A0A0R1K4H9	NA	NA
UHGV-0079850_17	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0079850_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0079850_18	PHROG	phrog_387	neck protein	connector
UHGV-0079850_18	UniRef90	UniRef90_A0A0E4H9B2	NA	NA
UHGV-0079850_18	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0079850_19	PHROG	phrog_123	tail terminator	connector
UHGV-0079850_19	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0079850_19	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0079850_19	Structural annotation	PF06141	NA	NA
UHGV-0079850_20	PHROG	phrog_117	major tail protein	tail
UHGV-0079850_20	UniRef90	UniRef90_UPI00156E6ACC	phage tail protein	NA
UHGV-0079850_20	eggNOG-mapper	1123263.AUKY01000068_gene494	NA	NA
UHGV-0079850_20	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0079850_21	PHROG	phrog_1526	NA	unknown function
UHGV-0079850_22	PHROG	phrog_1633	NA	unknown function
UHGV-0079850_22	UniRef90	UniRef90_A0A139QHL2	NA	NA
UHGV-0079850_22	eggNOG-mapper	585203.SMSK564_1277	NA	NA
UHGV-0079850_22	Pfam	PF17318	NA	DUF5361
UHGV-0079850_22	Structural annotation	PF17318	NA	NA
UHGV-0079850_23	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0079850_23	UniRef90	UniRef90_A0A352NC17	Phage tail protein (Fragment)	NA
UHGV-0079850_23	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0079850_23	COG	COG5412	Phage-related protein	NA
UHGV-0079850_24	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0079850_25	Structural annotation	PF14594, TIGR01646, COG4926	NA	NA
UHGV-0079850_26	PHROG	phrog_6779	tail protein	tail
UHGV-0079850_26	Structural annotation	PF20747	NA	NA
UHGV-0079850_28	PHROG	phrog_21357	endolysin	lysis
UHGV-0079850_28	UniRef90	UniRef90_A0A7X5D2C6	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0079850_28	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0079850_28	Pfam	PF05257	CHAP domain	CHAP
UHGV-0079850_28	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0079850_28	COG	COG1388	LysM repeat	NA
UHGV-0079850_28	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0079850_29	PHROG	phrog_937	hemolysin	other
UHGV-0079850_29	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0079850_30	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0079850_31	KOfam	K14059	int; integrase	NA
UHGV-0079850_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0079850_31	UniRef90	UniRef90_A0A3D1VH24	Site-specific integrase	NA
UHGV-0079850_31	eggNOG-mapper	742738.HMPREF9460_04031	Phage integrase family	NA
UHGV-0079850_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079850_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0079850_31	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0079850_32	KOfam	K19159	yefM; antitoxin YefM	NA
UHGV-0079850_32	PHROG	phrog_10078	NA	unknown function
UHGV-0079850_32	UniRef90	UniRef90_A0A291TAE3	Antitoxin	NA
UHGV-0079850_32	eggNOG-mapper	1278306.KB906908_gene633	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0079850_32	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0079850_32	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0079850_32	Structural annotation	PF02604, NF008499, COG2161	NA	NA
UHGV-0079850_33	KOfam	K19158	yoeB; toxin YoeB [EC:3.1.-.-]	NA
UHGV-0079850_33	UniRef90	UniRef90_R5DW66	Putative mRNA interferase YoeB	NA
UHGV-0079850_33	eggNOG-mapper	1095747.HMPREF1049_0107	addiction module toxin, Txe YoeB family	NA
UHGV-0079850_33	Pfam	PF06769	YoeB-like toxin of bacterial type II toxin-antitoxin system	YoeB_toxin
UHGV-0079850_33	NCBIFam	TIGR02116.1	Txe/YoeB family addiction module toxin	NA
UHGV-0079850_33	COG	COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	NA
UHGV-0079850_33	Structural annotation	PF06769, TIGR02116, COG4115	NA	NA
UHGV-0079850_34	UniRef90	UniRef90_A0A1E3AMS5	PBECR4 domain-containing protein	NA
UHGV-0079850_34	eggNOG-mapper	1280680.AUJU01000008_gene135	NA	NA
UHGV-0079850_34	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-0079850_34	Structural annotation	PF18813	NA	NA
UHGV-0079850_35	PHROG	phrog_5783	NA	unknown function
UHGV-0079850_35	UniRef90	UniRef90_A0A1C7FL48	Nuclease	NA
UHGV-0079850_35	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-0079850_35	Pfam	PF01936	NYN domain	NYN
UHGV-0079850_35	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0079850_35	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0079850_36	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0079850_36	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0079850_36	UniRef90	UniRef90_A0A7C9H3B0	BRCT domain-containing protein	NA
UHGV-0079850_36	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0079850_36	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0079850_36	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0079850_36	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0079850_36	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0079850_36	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0079850_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0079850_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079850_37	UniRef90	UniRef90_A0A4V2F884	DNA-binding XRE family transcriptional regulator	NA
UHGV-0079850_37	eggNOG-mapper	226185.EF_2544	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079850_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079850_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079850_37	Structural annotation	PF12844, MF_02017, NF007257, COG1396	NA	NA
UHGV-0079850_40	Structural annotation	PF06034, NF010671	NA	NA
UHGV-0079850_42	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0079850_42	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0079850_42	UniRef90	UniRef90_A0A645JJK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0079850_42	eggNOG-mapper	1298920.KI911353_gene4386	Helix-turn-helix domain	NA
UHGV-0079850_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079850_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079850_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0079850_43	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0079850_43	UniRef90	UniRef90_A0A2N2CPV3	Transcriptional regulator	NA
UHGV-0079850_43	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0079850_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0079850_43	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0079850_43	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0079850_44	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0079850_44	UniRef90	UniRef90_A0A1Y3RP45	HTH_17 domain-containing protein	NA
UHGV-0079850_44	eggNOG-mapper	1414720.CBYM010000001_gene815	DNA binding domain, excisionase family	NA
UHGV-0079850_44	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0079850_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0079850_44	COG	COG1910	Periplasmic molybdate-binding protein/domain	NA
UHGV-0079850_44	Structural annotation	PF12728, MF_01155, TIGR01764, COG3311	NA	NA
UHGV-0079850_46	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079850_46	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0079850_46	eggNOG-mapper	693746.OBV_30130	NA	NA
UHGV-0079850_46	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0079850_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0079850_46	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0079850_47	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079850_47	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079850_47	UniRef90	UniRef90_A0A3D1V9Y4	DNA helicase	NA
UHGV-0079850_47	eggNOG-mapper	1007096.BAGW01000033_gene1616	DnaB-like helicase N terminal domain	NA
UHGV-0079850_47	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0079850_47	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079850_47	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079850_47	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0079850_48	Structural annotation	PF01157	NA	NA