UHGV-0079908

Genome information

Genome length 56,671 bps

CDS count 100

Completeness 98.38% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079908
vOTU ID	vOTU-009995
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149936
BioSample	SAMEA2784448
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.38% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.68
Jumbo phage	No

Genome content
Genome length	56,671 bps
GC content	48.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	86.38%
Average CDS length	491.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079908_1	eggNOG-mapper	748224.HMPREF9436_00401	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position	NA
UHGV-0079908_1	COG	COG0296	1,4-alpha-glucan branching enzyme	NA
UHGV-0079908_2	KOfam	K21688	rpfB; resuscitation-promoting factor RpfB	NA
UHGV-0079908_2	UniRef90	UniRef90_A0A2J4JPG5	NA	NA
UHGV-0079908_2	eggNOG-mapper	748224.HMPREF9436_00402	G5 domain	NA
UHGV-0079908_2	Pfam	PF03990	G5-linked-Ubiquitin-like domain	DUF348
UHGV-0079908_2	Pfam	PF07501	G5 domain	G5
UHGV-0079908_2	Pfam	PF06725	3D domain	3D
UHGV-0079908_2	COG	COG3583	NA	NA
UHGV-0079908_4	UniRef90	UniRef90_UPI001EE15F2B	phage tail protein	NA
UHGV-0079908_4	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0079908_4	COG	COG5492	NA	NA
UHGV-0079908_6	PHROG	phrog_1382	NA	unknown function
UHGV-0079908_6	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0079908_7	KOfam	K07273	acm; lysozyme	NA
UHGV-0079908_7	PHROG	phrog_291	endolysin	lysis
UHGV-0079908_7	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0079908_7	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0079908_7	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0079908_7	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0079908_7	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0079908_9	PHROG	phrog_15303	NA	unknown function
UHGV-0079908_9	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0079908_10	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0079908_11	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0079908_11	UniRef90	UniRef90_UPI001D11EAA8	toxin Bro	NA
UHGV-0079908_11	eggNOG-mapper	556261.HMPREF0240_03657	Phage antirepressor protein	NA
UHGV-0079908_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0079908_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0079908_11	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0079908_12	UniRef90	UniRef90_UPI0009300B98	CopG family transcriptional regulator	NA
UHGV-0079908_12	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0079908_12	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0079908_13	Structural annotation	PF07878	NA	NA
UHGV-0079908_14	UniRef90	UniRef90_A0A859WYQ3	NA	NA
UHGV-0079908_14	Pfam	PF04448	NA	DUF551
UHGV-0079908_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0079908_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0079908_15	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0079908_15	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0079908_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0079908_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0079908_15	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0079908_16	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079908_16	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0079908_16	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0079908_16	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0079908_16	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0079908_16	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0079908_16	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0079908_17	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0079908_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079908_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079908_17	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079908_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079908_22	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0079908_22	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0079908_22	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0079908_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079908_23	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0079908_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079908_23	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0079908_24	Structural annotation	PF10922	NA	NA
UHGV-0079908_26	Structural annotation	TIGR03826	NA	NA
UHGV-0079908_28	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0079908_29	Structural annotation	PF14143	NA	NA
UHGV-0079908_30	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0079908_30	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0079908_30	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0079908_30	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0079908_32	eggNOG-mapper	857293.CAAU_1555	Probable zinc-ribbon domain	NA
UHGV-0079908_32	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0079908_32	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0079908_32	Structural annotation	PF13451	NA	NA
UHGV-0079908_33	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079908_33	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0079908_33	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0079908_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0079908_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0079908_34	PHROG	phrog_18107	NA	unknown function
UHGV-0079908_34	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0079908_34	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0079908_34	Structural annotation	PF05037	NA	NA
UHGV-0079908_35	PHROG	phrog_28936	NA	unknown function
UHGV-0079908_35	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0079908_35	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0079908_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0079908_36	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0079908_36	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0079908_36	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0079908_36	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0079908_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0079908_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0079908_36	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0079908_38	PHROG	phrog_35094	NA	unknown function
UHGV-0079908_38	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0079908_39	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0079908_40	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0079908_40	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0079908_40	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0079908_40	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0079908_44	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0079908_46	PHROG	phrog_924	NA	unknown function
UHGV-0079908_46	UniRef90	UniRef90_U2BA60	NA	NA
UHGV-0079908_46	Pfam	PF04448	NA	DUF551
UHGV-0079908_46	Structural annotation	NF041588	NA	NA
UHGV-0079908_47	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0079908_47	Structural annotation	PF16677	NA	NA
UHGV-0079908_48	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0079908_48	eggNOG-mapper	1121333.JMLH01000037_gene2007	restriction endonuclease	NA
UHGV-0079908_48	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0079908_48	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0079908_55	KOfam	K21686	prpR; XRE family transcriptional regulator, fatty acid utilization regulator	NA
UHGV-0079908_55	PHROG	phrog_11947	NA	unknown function
UHGV-0079908_55	eggNOG-mapper	584708.Apau_0460	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079908_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079908_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079908_55	Structural annotation	PF01381, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0079908_56	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0079908_56	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0079908_56	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0079908_60	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-0079908_60	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0079908_60	Structural annotation	PF14354	NA	NA
UHGV-0079908_61	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0079908_61	Pfam	PF19808	NA	DUF6291
UHGV-0079908_61	Structural annotation	PF19808	NA	NA
UHGV-0079908_62	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079908_62	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079908_62	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0079908_62	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0079908_62	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079908_62	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079908_62	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0079908_64	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0079908_64	UniRef90	UniRef90_A0A1Y3SW45	RepA_N domain-containing protein (Fragment)	NA
UHGV-0079908_64	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-0079908_64	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-0079908_64	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-0079908_66	eggNOG-mapper	1235792.C808_01237	NA	NA
UHGV-0079908_67	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079908_67	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0079908_72	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-0079908_72	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0079908_72	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0079908_74	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0079908_74	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0079908_74	UniRef90	UniRef90_UPI001C039A6C	ORF6C domain-containing protein	NA
UHGV-0079908_74	eggNOG-mapper	416870.llmg_0797	ORF6C domain	NA
UHGV-0079908_74	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0079908_74	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0079908_74	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0079908_74	Structural annotation	PF10552, PF08346, TIGR02681, COG3561	NA	NA
UHGV-0079908_75	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0079908_77	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0079908_77	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0079908_78	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0079908_78	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0079908_78	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0079908_78	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0079908_78	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0079908_78	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0079908_78	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0079908_79	Structural annotation	NF009949	NA	NA
UHGV-0079908_82	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0079908_82	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0079908_82	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0079908_82	COG	COG5410	NA	NA
UHGV-0079908_82	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0079908_84	PHROG	phrog_64	portal protein	head and packaging
UHGV-0079908_84	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0079908_84	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0079908_84	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079908_84	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0079908_85	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0079908_85	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0079908_85	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0079908_88	PHROG	phrog_29	major head protein	head and packaging
UHGV-0079908_88	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0079908_88	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0079908_88	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0079908_88	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0079908_89	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0079908_89	Structural annotation	TIGR01560	NA	NA
UHGV-0079908_90	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0079908_90	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0079908_92	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0079908_93	PHROG	phrog_158	major tail protein	tail
UHGV-0079908_93	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0079908_93	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0079908_93	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0079908_94	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0079908_94	Pfam	PF16478	NA	DUF5055
UHGV-0079908_94	Structural annotation	PF16478	NA	NA
UHGV-0079908_95	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0079908_96	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0079908_96	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0079908_96	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0079908_97	PHROG	phrog_1194	NA	unknown function
UHGV-0079908_97	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0079908_97	Pfam	PF20458	NA	DUF6711
UHGV-0079908_97	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0079908_98	PHROG	phrog_13879	NA	unknown function
UHGV-0079908_98	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0079908_98	Pfam	PF19789	NA	DUF6273
UHGV-0079908_98	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0079908_99	PHROG	phrog_18725	NA	unknown function
UHGV-0079908_99	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0079908_100	PHROG	phrog_9534	head protein	head and packaging
UHGV-0079908_100	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0079908_100	COG	COG5492	NA	NA