UHGV-0079993

Genome information

Genome length 24,694 bps

CDS count 38

Completeness 58.56% (medium-quality)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079993
vOTU ID	vOTU-041507
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146623
BioSample	SAMEA2737685
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.61
Jumbo phage	No

Genome content
Genome length	24,694 bps
GC content	42.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	87.13%
Average CDS length	571.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079993_1	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0079993_1	UniRef90	UniRef90_A0A1G5F1L8	Phage protein, HK97 gp10 family	NA
UHGV-0079993_1	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0079993_1	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0079993_2	PHROG	phrog_2168	NA	unknown function
UHGV-0079993_2	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0079993_2	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0079993_3	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0079993_3	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-0079993_3	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0079993_3	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0079993_3	Structural annotation	PF05135	NA	NA
UHGV-0079993_4	PHROG	phrog_2724	NA	unknown function
UHGV-0079993_4	UniRef90	UniRef90_A0A1C5VLL2	Rho termination factor, N-terminal domain	NA
UHGV-0079993_4	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0079993_4	COG	COG0261	Ribosomal protein L21	NA
UHGV-0079993_4	Structural annotation	PF07498	NA	NA
UHGV-0079993_5	PHROG	phrog_422	major head protein	head and packaging
UHGV-0079993_5	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0079993_5	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0079993_5	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0079993_6	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0079993_6	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0079993_6	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0079993_6	Pfam	PF14265	NA	DUF4355
UHGV-0079993_6	Structural annotation	PF14265	NA	NA
UHGV-0079993_9	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0079993_9	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0079993_9	eggNOG-mapper	1235800.C819_00488	Phage Mu protein F like protein	NA
UHGV-0079993_9	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0079993_9	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0079993_9	COG	COG2369	NA	NA
UHGV-0079993_9	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0079993_10	PHROG	phrog_64	portal protein	head and packaging
UHGV-0079993_10	UniRef90	UniRef90_A0A1G5F2B6	Phage portal protein, SPP1 family	NA
UHGV-0079993_10	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0079993_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079993_10	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0079993_10	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0079993_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0079993_11	PHROG	phrog_10250	NA	unknown function
UHGV-0079993_11	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-0079993_11	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0079993_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0079993_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0079993_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0079993_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0079993_12	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0079993_12	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-0079993_12	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0079993_12	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0079993_12	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0079993_12	COG	COG5484	NA	NA
UHGV-0079993_12	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0079993_15	eggNOG-mapper	641107.CDLVIII_1362	NA	NA
UHGV-0079993_15	AcrCatalog	cluster_38765	NA	NA
UHGV-0079993_15	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-0079993_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0079993_16	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0079993_16	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0079993_16	Structural annotation	PF04545	NA	NA
UHGV-0079993_17	PHROG	phrog_6568	NA	unknown function
UHGV-0079993_21	PHROG	phrog_7566	NA	unknown function
UHGV-0079993_21	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0079993_22	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0079993_22	PHROG	phrog_15077	NA	unknown function
UHGV-0079993_22	UniRef90	UniRef90_A0A1C5PHC7	ParB-like nuclease domain	NA
UHGV-0079993_22	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0079993_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0079993_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0079993_22	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0079993_23	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0079993_23	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0079993_23	UniRef90	UniRef90_A0A1C5VK85	Sporulation initiation inhibitor protein soj	NA
UHGV-0079993_23	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0079993_23	Pfam	PF13614	AAA domain	AAA_31
UHGV-0079993_23	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0079993_23	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0079993_25	UniRef90	UniRef90_A0A1C5PHR0	Ribonuclease H	NA
UHGV-0079993_25	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0079993_25	COG	COG0328	Ribonuclease HI	NA
UHGV-0079993_25	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0079993_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079993_26	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0079993_26	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0079993_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0079993_29	PHROG	phrog_28292	NA	unknown function
UHGV-0079993_29	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0079993_29	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0079993_32	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079993_32	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-0079993_32	eggNOG-mapper	420246.GTNG_2077	NA	NA
UHGV-0079993_32	Structural annotation	PF06573	NA	NA
UHGV-0079993_33	UniRef90	UniRef90_A0A416BNK0	NA	NA
UHGV-0079993_33	eggNOG-mapper	257314.LJ_1456	NA	NA
UHGV-0079993_33	Pfam	PF05339	NA	DUF739
UHGV-0079993_33	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0079993_33	Structural annotation	PF05339, NF041575, COG3655	NA	NA
UHGV-0079993_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0079993_34	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0079993_34	UniRef90	UniRef90_A0A1G5F4H5	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079993_34	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-0079993_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079993_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079993_34	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0079993_35	PHROG	phrog_37898	NA	unknown function
UHGV-0079993_35	UniRef90	UniRef90_A0A416QWX7	NA	NA
UHGV-0079993_35	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-0079993_35	Pfam	PF10387	NA	DUF2442
UHGV-0079993_36	PHROG	phrog_87	metallo-protease	other
UHGV-0079993_36	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0079993_36	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0079993_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0079993_36	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0079993_36	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0079993_37	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0079993_37	UniRef90	UniRef90_UPI001D0F2C35	Ig-like domain-containing protein	NA
UHGV-0079993_37	eggNOG-mapper	180332.JTGN01000004_gene2488	domain, Protein	NA
UHGV-0079993_37	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0079993_37	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA
UHGV-0079993_38	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0079993_38	PHROG	phrog_95	integrase	integration and excision
UHGV-0079993_38	UniRef90	UniRef90_K1SIM9	Site-specific recombinase (Fragment)	NA
UHGV-0079993_38	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0079993_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0079993_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0079993_38	Structural annotation	PF00239, NF041201, COG1961	NA	NA