UHGV-0080003

Genome information

Genome length 41,647 bps

CDS count 60

Completeness 99.84% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080003
vOTU ID	vOTU-081150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_141982
BioSample	SAMEA2737682
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.84% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.48
Jumbo phage	No

Genome content
Genome length	41,647 bps
GC content	45.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.54%
Average CDS length	654.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080003_1	PHROG	phrog_22978	NA	unknown function
UHGV-0080003_1	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-0080003_2	KOfam	K12943	ygeR; lipoprotein YgeR	NA
UHGV-0080003_2	PHROG	phrog_4602	transglycosylase	other
UHGV-0080003_2	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0080003_2	Pfam	PF01476	LysM domain	LysM
UHGV-0080003_3	PHROG	phrog_18190	NA	unknown function
UHGV-0080003_3	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0080003_4	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0080003_4	eggNOG-mapper	1321782.HMPREF1986_00351	NA	NA
UHGV-0080003_4	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0080003_5	PHROG	phrog_12105	NA	unknown function
UHGV-0080003_5	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0080003_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0080003_7	eggNOG-mapper	411470.RUMGNA_02214	NA	NA
UHGV-0080003_7	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0080003_8	PHROG	phrog_20274	NA	unknown function
UHGV-0080003_8	UniRef90	UniRef90_A0A174MAK4	Membrane protein	NA
UHGV-0080003_8	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0080003_8	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0080003_8	COG	COG4905	NA	NA
UHGV-0080003_8	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0080003_9	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0080003_9	UniRef90	UniRef90_UPI001BC63046	Acyl carrier protein	NA
UHGV-0080003_9	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0080003_9	Structural annotation	PF14301	NA	NA
UHGV-0080003_10	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0080003_10	PHROG	phrog_25888	NA	unknown function
UHGV-0080003_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0080003_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0080003_12	UniRef90	UniRef90_A0A3E2WGW1	N4-gp56 family major capsid protein	NA
UHGV-0080003_12	eggNOG-mapper	748224.HMPREF9436_02545	NA	NA
UHGV-0080003_12	Pfam	PF13252	NA	DUF4043
UHGV-0080003_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0080003_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080003_13	PHROG	phrog_13908	NA	unknown function
UHGV-0080003_13	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0080003_14	KOfam	K07584	NA	NA
UHGV-0080003_14	PHROG	phrog_4478	peptidase	other
UHGV-0080003_14	UniRef90	UniRef90_UPI00102FFAFD	ribosomal-processing cysteine protease Prp	NA
UHGV-0080003_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0080003_14	COG	COG2868	NA	NA
UHGV-0080003_14	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0080003_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-0080003_15	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0080003_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0080003_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080003_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0080003_16	UniRef90	UniRef90_A0A316SB77	Terminase-like family protein	NA
UHGV-0080003_16	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0080003_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080003_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080003_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080003_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0080003_17	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0080003_17	UniRef90	UniRef90_UPI0018AAB08F	terminase small subunit	NA
UHGV-0080003_17	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0080003_17	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0080003_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0080003_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0080003_19	PHROG	phrog_13890	NA	unknown function
UHGV-0080003_19	UniRef90	UniRef90_S0JNN4	Arc domain-containing protein	NA
UHGV-0080003_19	eggNOG-mapper	1235790.C805_00066	NA	NA
UHGV-0080003_19	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0080003_21	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0080003_21	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080003_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080003_25	PHROG	phrog_874	NA	unknown function
UHGV-0080003_25	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0080003_25	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0080003_25	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0080003_28	eggNOG-mapper	1232453.BAIF02000057_gene1147	NA	NA
UHGV-0080003_29	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0080003_29	UniRef90	UniRef90_A0A3A6EPW1	DNA cytosine methyltransferase	NA
UHGV-0080003_29	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0080003_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080003_30	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0080003_30	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0080003_30	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0080003_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080003_31	PHROG	phrog_5781	NA	unknown function
UHGV-0080003_31	UniRef90	UniRef90_UPI001BBBA8BA	NA	NA
UHGV-0080003_31	eggNOG-mapper	1125725.HMPREF1325_1838	NA	NA
UHGV-0080003_31	Pfam	PF14359	NA	DUF4406
UHGV-0080003_31	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0080003_31	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0080003_34	UniRef90	UniRef90_UPI001897C27C	NA	NA
UHGV-0080003_34	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0080003_34	Pfam	PF04448	NA	DUF551
UHGV-0080003_34	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0080003_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080003_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080003_35	UniRef90	UniRef90_UPI001BC26013	Single-stranded DNA-binding protein	NA
UHGV-0080003_35	eggNOG-mapper	742723.HMPREF9477_01387	Single-strand binding protein family	NA
UHGV-0080003_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080003_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080003_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080003_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080003_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080003_36	PHROG	phrog_24368	NA	unknown function
UHGV-0080003_36	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0080003_37	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080003_37	eggNOG-mapper	742740.HMPREF9474_04323	NA	NA
UHGV-0080003_37	Structural annotation	PF21578	NA	NA
UHGV-0080003_42	PHROG	phrog_7566	NA	unknown function
UHGV-0080003_42	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-0080003_43	PHROG	phrog_9958	NA	unknown function
UHGV-0080003_43	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0080003_43	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0080003_43	Pfam	PF19789	NA	DUF6273
UHGV-0080003_44	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0080003_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080003_44	UniRef90	UniRef90_A0A3R6JTC8	XRE family transcriptional regulator	NA
UHGV-0080003_44	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080003_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080003_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080003_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080003_45	PHROG	phrog_14556	NA	unknown function
UHGV-0080003_45	eggNOG-mapper	556261.HMPREF0240_02539	translation initiation factor activity	NA
UHGV-0080003_45	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0080003_48	PHROG	phrog_26861	NA	unknown function
UHGV-0080003_48	UniRef90	UniRef90_UPI001D06FBDF	single-stranded DNA-binding protein	NA
UHGV-0080003_48	eggNOG-mapper	1226325.HMPREF1548_02496	PFAM single-strand binding protein	NA
UHGV-0080003_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080003_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080003_48	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0080003_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080003_49	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080003_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080003_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0080003_50	UniRef90	UniRef90_A0A1C5W233	Recombinase	NA
UHGV-0080003_50	eggNOG-mapper	483218.BACPEC_01184	Resolvase, N terminal domain	NA
UHGV-0080003_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080003_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0080003_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0080003_50	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0080003_51	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0080003_55	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0080003_55	PHROG	phrog_7	endolysin	lysis
UHGV-0080003_55	UniRef90	UniRef90_A0A843HJI5	Lysozyme	NA
UHGV-0080003_55	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0080003_55	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0080003_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0080003_55	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0080003_55	HAMAP	MF_04110	Endolysin	NA
UHGV-0080003_55	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0080003_56	PHROG	phrog_443	holin	lysis
UHGV-0080003_56	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0080003_56	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0080003_56	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0080003_56	Structural annotation	PF16945	NA	NA
UHGV-0080003_57	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0080003_57	UniRef90	UniRef90_A0A396KGT7	NA	NA
UHGV-0080003_57	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0080003_57	Pfam	PF14359	NA	DUF4406
UHGV-0080003_57	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0080003_58	PHROG	phrog_1048	NA	unknown function
UHGV-0080003_58	UniRef90	UniRef90_A0A396MNX1	NA	NA
UHGV-0080003_58	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0080003_58	Pfam	PF11195	NA	DUF2829
UHGV-0080003_58	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0080003_58	Structural annotation	PF11195	NA	NA
UHGV-0080003_59	PHROG	phrog_937	hemolysin	other
UHGV-0080003_59	UniRef90	UniRef90_R5GGW2	Phosphoglucosamine mutase	NA
UHGV-0080003_59	eggNOG-mapper	1235792.C808_00576	NA	NA
UHGV-0080003_60	PHROG	phrog_22978	NA	unknown function
UHGV-0080003_60	UniRef90	UniRef90_A0A396QCY9	MuF_C domain-containing protein	NA
UHGV-0080003_60	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA