UHGV-0080008

Genome information

Genome length 34,673 bps

CDS count 42

Completeness 81.16% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080008
vOTU ID	vOTU-017540
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_141943
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.8
Jumbo phage	No

Genome content
Genome length	34,673 bps
GC content	43.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	87.91%
Average CDS length	730.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080008_1	PHROG	phrog_1863	NA	unknown function
UHGV-0080008_1	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0080008_2	PHROG	phrog_18444	NA	unknown function
UHGV-0080008_2	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0080008_2	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0080008_3	PHROG	phrog_6616	tail protein	tail
UHGV-0080008_3	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0080008_3	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0080008_3	Structural annotation	PF03944	NA	NA
UHGV-0080008_4	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0080008_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0080008_4	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0080008_4	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0080008_4	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0080008_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080008_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080008_4	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0080008_6	PHROG	phrog_6616	tail protein	tail
UHGV-0080008_6	UniRef90	UniRef90_UPI001C10B551	tail fiber domain-containing protein	NA
UHGV-0080008_6	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0080008_6	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0080008_6	COG	COG4926	Phage-related protein	NA
UHGV-0080008_6	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0080008_7	PHROG	phrog_1401	NA	unknown function
UHGV-0080008_7	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0080008_7	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0080008_7	Structural annotation	PF07761	NA	NA
UHGV-0080008_8	PHROG	phrog_2566	NA	unknown function
UHGV-0080008_8	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0080008_9	PHROG	phrog_1194	NA	unknown function
UHGV-0080008_9	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0080008_9	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0080008_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0080008_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080008_10	UniRef90	UniRef90_A0A448W7L1	Phage-related protein	NA
UHGV-0080008_10	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0080008_10	COG	COG5412	Phage-related protein	NA
UHGV-0080008_11	PHROG	phrog_2066	NA	unknown function
UHGV-0080008_11	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0080008_12	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-0080008_12	eggNOG-mapper	1235800.C819_00478	NA	NA
UHGV-0080008_12	Pfam	PF19591	NA	DUF6096
UHGV-0080008_12	Structural annotation	PF19591	NA	NA
UHGV-0080008_13	PHROG	phrog_158	major tail protein	tail
UHGV-0080008_13	UniRef90	UniRef90_A0A415FLM9	Phage tail protein	NA
UHGV-0080008_13	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0080008_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0080008_14	eggNOG-mapper	1235800.C819_00480	NA	NA
UHGV-0080008_14	Structural annotation	PF05657	NA	NA
UHGV-0080008_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0080008_15	UniRef90	UniRef90_A0A1G5F1L8	Phage protein, HK97 gp10 family	NA
UHGV-0080008_15	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0080008_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0080008_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0080008_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0080008_16	PHROG	phrog_2168	NA	unknown function
UHGV-0080008_16	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0080008_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0080008_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0080008_17	UniRef90	UniRef90_A0A1G5F1K3	Phage gp6-like head-tail connector protein	NA
UHGV-0080008_17	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0080008_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0080008_17	Structural annotation	PF05135	NA	NA
UHGV-0080008_18	PHROG	phrog_2724	NA	unknown function
UHGV-0080008_18	UniRef90	UniRef90_A0A564VY53	Rho_N domain-containing protein	NA
UHGV-0080008_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0080008_18	COG	COG0261	Ribosomal protein L21	NA
UHGV-0080008_18	Structural annotation	PF07498	NA	NA
UHGV-0080008_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080008_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0080008_19	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0080008_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0080008_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0080008_20	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0080008_20	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0080008_20	Pfam	PF14265	NA	DUF4355
UHGV-0080008_20	Structural annotation	PF14265	NA	NA
UHGV-0080008_21	Structural annotation	PF01281	NA	NA
UHGV-0080008_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0080008_23	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0080008_23	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-0080008_23	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0080008_23	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0080008_23	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0080008_23	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0080008_23	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0080008_24	PHROG	phrog_3896	NA	unknown function
UHGV-0080008_26	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0080008_26	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0080008_26	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0080008_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0080008_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0080008_26	COG	COG2369	NA	NA
UHGV-0080008_26	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0080008_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0080008_27	UniRef90	UniRef90_A0A564VYQ1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0080008_27	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0080008_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080008_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0080008_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0080008_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080008_28	PHROG	phrog_10250	NA	unknown function
UHGV-0080008_28	UniRef90	UniRef90_A0A1G5F2L0	Phage terminase, large subunit, PBSX family	NA
UHGV-0080008_28	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0080008_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080008_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080008_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080008_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080008_29	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0080008_29	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-0080008_29	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0080008_29	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0080008_29	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0080008_29	COG	COG5484	NA	NA
UHGV-0080008_29	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0080008_30	eggNOG-mapper	553219.CAMSH0001_1671	NA	NA
UHGV-0080008_30	Structural annotation	PF09254, MF_00278, TIGR03800, COG1787, COG0311	NA	NA
UHGV-0080008_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080008_31	UniRef90	UniRef90_A0A1C5VKJ4	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0080008_31	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0080008_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0080008_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0080008_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0080008_32	PHROG	phrog_6568	NA	unknown function
UHGV-0080008_34	PHROG	phrog_15077	NA	unknown function
UHGV-0080008_34	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0080008_34	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0080008_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0080008_34	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0080008_35	PHROG	phrog_8470	NA	unknown function
UHGV-0080008_35	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0080008_35	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0080008_35	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0080008_35	Structural annotation	PF14284	NA	NA
UHGV-0080008_36	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0080008_37	UniRef90	UniRef90_A0A3S5AUR2	Ribonuclease H	NA
UHGV-0080008_37	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0080008_37	COG	COG0328	Ribonuclease HI	NA
UHGV-0080008_37	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0080008_38	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080008_38	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0080008_38	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0080008_38	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0080008_40	PHROG	phrog_28292	NA	unknown function
UHGV-0080008_40	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0080008_40	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0080008_42	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0080008_42	UniRef90	UniRef90_A0A173WPH2	Helix-turn-helix domain	NA
UHGV-0080008_42	eggNOG-mapper	696281.Desru_1067	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080008_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080008_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080008_42	Structural annotation	PF01381, NF041951, COG1396	NA	NA