UHGV-0080018

Genome information

Genome length 28,893 bps

CDS count 52

Completeness 67.56% (medium-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080018
vOTU ID	vOTU-026024
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_148900
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.56% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.91
Jumbo phage	No

Genome content
Genome length	28,893 bps
GC content	56.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.52%
Average CDS length	519.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080018_1	PHROG	phrog_1129	holin	lysis
UHGV-0080018_1	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0080018_1	eggNOG-mapper	1007096.BAGW01000035_gene1305	NA	NA
UHGV-0080018_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0080018_1	Structural annotation	PF06946	NA	NA
UHGV-0080018_2	PHROG	phrog_4105	NA	unknown function
UHGV-0080018_2	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0080018_2	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0080018_4	PHROG	phrog_18593	NA	unknown function
UHGV-0080018_4	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0080018_4	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0080018_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0080018_4	Structural annotation	PF14600	NA	NA
UHGV-0080018_6	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0080018_6	Structural annotation	PF21722	NA	NA
UHGV-0080018_7	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0080018_7	Structural annotation	PF21722	NA	NA
UHGV-0080018_8	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0080018_8	eggNOG-mapper	1235793.C809_03302	NA	NA
UHGV-0080018_9	PHROG	phrog_15239	NA	unknown function
UHGV-0080018_9	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0080018_10	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0080018_10	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0080018_10	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0080018_10	Pfam	PF13252	NA	DUF4043
UHGV-0080018_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0080018_10	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080018_11	PHROG	phrog_13908	NA	unknown function
UHGV-0080018_11	UniRef90	UniRef90_A0A844DRV7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0080018_11	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0080018_12	UniRef90	UniRef90_A0A8D9PDR6	YsxB-like protein	NA
UHGV-0080018_12	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0080018_12	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0080018_13	PHROG	phrog_156	portal protein	head and packaging
UHGV-0080018_13	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0080018_13	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0080018_13	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0080018_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080018_14	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0080018_14	UniRef90	UniRef90_A0A8D9PDR5	Large subunit terminase	NA
UHGV-0080018_14	eggNOG-mapper	1321782.HMPREF1986_00343	NA	NA
UHGV-0080018_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080018_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080018_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080018_15	UniRef90	UniRef90_A0A8D9PDT2	Brinker DNA-binding domain protein	NA
UHGV-0080018_15	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0080018_15	Structural annotation	PF13542	NA	NA
UHGV-0080018_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080018_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080018_16	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0080018_16	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0080018_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080018_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080018_16	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080018_19	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0080018_21	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0080018_22	UniRef90	UniRef90_A0A8D9PDQ6	Restriction alleviation protein	NA
UHGV-0080018_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0080018_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0080018_23	PHROG	phrog_3136	NA	unknown function
UHGV-0080018_23	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0080018_23	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0080018_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0080018_23	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0080018_25	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0080018_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0080018_26	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0080018_26	UniRef90	UniRef90_A0A8D9PDD1	DNA (Cytosine 5) methyltransferase	NA
UHGV-0080018_26	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0080018_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0080018_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080018_26	Structural annotation	PF00145, MF_00341, TIGR00675, COG0270	NA	NA
UHGV-0080018_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0080018_28	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0080018_28	UniRef90	UniRef90_A0A7X8MLD3	Methyltransferase	NA
UHGV-0080018_28	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0080018_28	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0080018_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0080018_28	COG	COG0863	DNA modification methylase	NA
UHGV-0080018_28	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0080018_29	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080018_29	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0080018_29	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0080018_29	Pfam	PF06356	NA	DUF1064
UHGV-0080018_29	Structural annotation	PF06356	NA	NA
UHGV-0080018_31	PHROG	phrog_15768	NA	unknown function
UHGV-0080018_31	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0080018_31	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0080018_31	Pfam	PF19808	NA	DUF6291
UHGV-0080018_31	Structural annotation	PF19808	NA	NA
UHGV-0080018_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080018_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080018_33	UniRef90	UniRef90_R6GTK3	Single-stranded DNA-binding protein	NA
UHGV-0080018_33	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0080018_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080018_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080018_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080018_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080018_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0080018_34	PHROG	phrog_7566	NA	unknown function
UHGV-0080018_34	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0080018_34	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0080018_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0080018_36	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0080018_36	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0080018_36	Structural annotation	PF05772	NA	NA
UHGV-0080018_37	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0080018_37	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0080018_38	UniRef90	UniRef90_A0A845QLQ8	NA	NA
UHGV-0080018_38	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0080018_38	Pfam	PF06378	NA	DUF1071
UHGV-0080018_38	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0080018_40	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0080018_40	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0080018_40	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0080018_42	PHROG	phrog_22529	NA	unknown function
UHGV-0080018_42	UniRef90	UniRef90_A0A8D9UHA1	3D containing protein	NA
UHGV-0080018_42	eggNOG-mapper	742733.HMPREF9469_00853	3D domain	NA
UHGV-0080018_42	Pfam	PF06725	3D domain	3D
UHGV-0080018_42	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0080018_42	Structural annotation	COG3584	NA	NA
UHGV-0080018_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080018_45	UniRef90	UniRef90_UPI000831CB3C	helix-turn-helix domain-containing protein	NA
UHGV-0080018_45	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0080018_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080018_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080018_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0080018_46	eggNOG-mapper	55511.Q4ZE02_9CAUD	sequence-specific DNA binding	NA
UHGV-0080018_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080018_46	Structural annotation	PF01381, MF_00535, NF041951, TIGR02607, COG3655, COG3093	NA	NA
UHGV-0080018_50	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0080018_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080018_50	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0080018_50	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0080018_51	KOfam	K14059	int; integrase	NA
UHGV-0080018_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0080018_51	UniRef90	UniRef90_U2QJL8	Site-specific recombinase, phage integrase family	NA
UHGV-0080018_51	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0080018_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080018_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080018_51	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0080018_52	KOfam	K00974	cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]	NA
UHGV-0080018_52	PHROG	phrog_2244	tRNA nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0080018_52	UniRef90	UniRef90_R6CYX9	tRNA nucleotidyltransferase	NA
UHGV-0080018_52	eggNOG-mapper	1007096.BAGW01000023_gene179	Probable RNA and SrmB- binding site of polymerase A	NA
UHGV-0080018_52	Pfam	PF01743	Poly A polymerase head domain	PolyA_pol
UHGV-0080018_52	Pfam	PF12627	Probable RNA and SrmB- binding site of polymerase A	PolyA_pol_RNAbd
UHGV-0080018_52	Pfam	PF13735	tRNA nucleotidyltransferase domain 2 putative	tRNA_NucTran2_2
UHGV-0080018_52	COG	COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	NA
UHGV-0080018_52	Structural annotation	PF01743, PF13735, PF12627, MF_01263, TIGR02692, COG0617	NA	NA