UHGV-0080074

Genome information

Genome length 41,599 bps

CDS count 60

Completeness 93.51% (high-quality)

geNomad score 0.9511

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080074
vOTU ID	vOTU-068802
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_165854
BioSample	SAMEA3136735
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9511
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.09
Jumbo phage	No

Genome content
Genome length	41,599 bps
GC content	32.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.93%
Average CDS length	648.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080074_2	PHROG	phrog_31911	NA	unknown function
UHGV-0080074_2	eggNOG-mapper	1273103.NM10_03231	NA	NA
UHGV-0080074_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080074_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080074_6	UniRef90	UniRef90_UPI0019569AF1	single-stranded DNA-binding protein	NA
UHGV-0080074_6	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0080074_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080074_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080074_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080074_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080074_6	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080074_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080074_7	eggNOG-mapper	471875.RUMLAC_02229	NA	NA
UHGV-0080074_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0080074_8	dbAPIS	APIS070	NA	NA
UHGV-0080074_9	PHROG	phrog_9467	NA	unknown function
UHGV-0080074_9	UniRef90	UniRef90_UPI0015B3EAA7	Gp49 family protein	NA
UHGV-0080074_9	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0080074_9	Pfam	PF13876	NA	Phage_gp49_66
UHGV-0080074_9	dbAPIS	APIS043	NA	NA
UHGV-0080074_9	Structural annotation	PF13876	NA	NA
UHGV-0080074_10	PHROG	phrog_774	NA	unknown function
UHGV-0080074_10	UniRef90	UniRef90_A0A8F1B624	NA	NA
UHGV-0080074_10	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0080074_12	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0080074_12	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0080074_12	UniRef90	UniRef90_UPI001430C3DA	terminase small subunit	NA
UHGV-0080074_12	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0080074_12	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0080074_12	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0080074_12	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0080074_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080074_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0080074_13	UniRef90	UniRef90_UPI00195A06A7	PBSX family phage terminase large subunit	NA
UHGV-0080074_13	eggNOG-mapper	1123250.KB908417_gene648	Phage terminase large subunit	NA
UHGV-0080074_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080074_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0080074_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080074_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080074_13	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080074_14	PHROG	phrog_64	portal protein	head and packaging
UHGV-0080074_14	UniRef90	UniRef90_UPI00195B8F7D	phage portal protein	NA
UHGV-0080074_14	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0080074_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080074_14	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0080074_14	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0080074_15	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0080074_15	UniRef90	UniRef90_UPI001956544F	minor capsid protein	NA
UHGV-0080074_15	eggNOG-mapper	1123250.KB908417_gene646	Phage Mu protein F like protein	NA
UHGV-0080074_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0080074_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0080074_15	COG	COG2369	NA	NA
UHGV-0080074_18	KOfam	K07584	NA	NA
UHGV-0080074_18	PHROG	phrog_4478	peptidase	other
UHGV-0080074_18	UniRef90	UniRef90_A0A848BCF7	Ribosomal-processing cysteine protease Prp	NA
UHGV-0080074_18	eggNOG-mapper	1321781.HMPREF1985_02105	Cysteine protease Prp	NA
UHGV-0080074_18	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0080074_18	COG	COG2868	NA	NA
UHGV-0080074_18	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0080074_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0080074_19	UniRef90	UniRef90_UPI0014322C57	NA	NA
UHGV-0080074_19	eggNOG-mapper	642492.Clole_0971	NA	NA
UHGV-0080074_19	Pfam	PF14265	NA	DUF4355
UHGV-0080074_19	Structural annotation	PF14265	NA	NA
UHGV-0080074_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080074_20	UniRef90	UniRef90_UPI00142F588B	phage major capsid protein	NA
UHGV-0080074_20	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0080074_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080074_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080074_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080074_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080074_21	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0080074_21	eggNOG-mapper	1111454.HMPREF1250_0188	NA	NA
UHGV-0080074_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0080074_22	eggNOG-mapper	1111454.HMPREF1250_0189	NA	NA
UHGV-0080074_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0080074_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0080074_23	UniRef90	UniRef90_UPI0014302D01	HK97 gp10 family phage protein	NA
UHGV-0080074_23	eggNOG-mapper	883156.HMPREF9282_00955	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0080074_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0080074_24	PHROG	phrog_525	NA	unknown function
UHGV-0080074_24	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0080074_24	Pfam	PF20765	NA	DUF6838
UHGV-0080074_25	PHROG	phrog_32779	NA	unknown function
UHGV-0080074_25	eggNOG-mapper	1235803.C825_05332	Collagen triple helix repeat (20 copies)	NA
UHGV-0080074_25	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0080074_27	PHROG	phrog_1480	tail sheath	tail
UHGV-0080074_27	UniRef90	UniRef90_A0A378NUX7	Phage tail sheath protein	NA
UHGV-0080074_27	eggNOG-mapper	1123250.KB908414_gene2110	Phage tail sheath C-terminal domain	NA
UHGV-0080074_27	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0080074_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0080074_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0080074_28	PHROG	phrog_365	tail protein	tail
UHGV-0080074_28	UniRef90	UniRef90_UPI0014307D12	phage tail tube protein	NA
UHGV-0080074_28	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0080074_28	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0080074_28	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0080074_29	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0080074_29	UniRef90	UniRef90_U7UIV5	Phage XkdN-like domain protein	NA
UHGV-0080074_29	eggNOG-mapper	1123250.KB908414_gene2112	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0080074_29	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0080074_29	Structural annotation	PF08890	NA	NA
UHGV-0080074_30	PHROG	phrog_16692	NA	unknown function
UHGV-0080074_30	UniRef90	UniRef90_H3K5C4	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0080074_30	eggNOG-mapper	1273103.NM10_01024	Phage-related minor tail protein	NA
UHGV-0080074_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0080074_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0080074_30	COG	COG5283	Phage-related tail protein	NA
UHGV-0080074_30	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0080074_31	PHROG	phrog_380	endolysin	lysis
UHGV-0080074_31	UniRef90	UniRef90_UPI001CF423A1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0080074_31	eggNOG-mapper	1123250.KB908414_gene2114	LysM domain	NA
UHGV-0080074_31	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0080074_31	Structural annotation	PF19266, TIGR01633, COG3499	NA	NA
UHGV-0080074_32	PHROG	phrog_400	tail protein	tail
UHGV-0080074_32	UniRef90	UniRef90_A0A848EUW7	Phage_lysozyme2 domain-containing protein	NA
UHGV-0080074_32	eggNOG-mapper	1273103.NM10_01014	NLP P60 protein	NA
UHGV-0080074_32	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0080074_32	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0080074_33	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0080074_33	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0080074_33	UniRef90	UniRef90_UPI001959F5E2	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0080074_33	eggNOG-mapper	645991.Sgly_2496	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0080074_33	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0080074_33	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0080074_33	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0080074_34	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0080074_34	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0080074_34	UniRef90	UniRef90_A0A3D0M7R5	Toxin HicA	NA
UHGV-0080074_34	eggNOG-mapper	591001.Acfer_1288	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0080074_34	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0080074_34	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0080074_34	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0080074_35	PHROG	phrog_579	NA	unknown function
UHGV-0080074_35	UniRef90	UniRef90_UPI001DAA9C69	NA	NA
UHGV-0080074_35	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0080074_35	Pfam	PF10844	NA	DUF2577
UHGV-0080074_35	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0080074_36	PHROG	phrog_120	baseplate protein	tail
UHGV-0080074_36	UniRef90	UniRef90_UPI0014314BBF	NA	NA
UHGV-0080074_36	eggNOG-mapper	1123250.KB908414_gene2117	NA	NA
UHGV-0080074_36	Pfam	PF10934	NA	DUF2634
UHGV-0080074_36	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0080074_37	PHROG	phrog_6	baseplate protein	tail
UHGV-0080074_37	UniRef90	UniRef90_H3K5D0	Baseplate_J domain-containing protein	NA
UHGV-0080074_37	eggNOG-mapper	883156.HMPREF9282_00965	Baseplate J-like protein	NA
UHGV-0080074_37	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0080074_37	COG	COG3299	NA	NA
UHGV-0080074_37	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0080074_38	PHROG	phrog_521	tail protein	tail
UHGV-0080074_38	UniRef90	UniRef90_UPI0019596FF9	NA	NA
UHGV-0080074_38	eggNOG-mapper	568816.Acin_1302	NA	NA
UHGV-0080074_38	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0080074_38	COG	COG3778	NA	NA
UHGV-0080074_38	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0080074_39	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0080074_39	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0080074_39	eggNOG-mapper	484770.UFO1_1716	Phage tail-collar fibre protein	NA
UHGV-0080074_39	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0080074_39	Structural annotation	PF12571	NA	NA
UHGV-0080074_42	KOfam	K14059	int; integrase	NA
UHGV-0080074_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0080074_42	UniRef90	UniRef90_A0A378NSV8	Tyrosine recombinase XerD	NA
UHGV-0080074_42	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0080074_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080074_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080074_42	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0080074_45	Structural annotation	PF13084	NA	NA
UHGV-0080074_46	PHROG	phrog_199	holin	lysis
UHGV-0080074_46	UniRef90	UniRef90_H3K5K9	Toxin secretion/phage lysis holin	NA
UHGV-0080074_46	eggNOG-mapper	927704.SELR_16600	Bacteriophage holin family	NA
UHGV-0080074_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0080074_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0080074_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0080074_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0080074_47	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0080074_47	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0080074_47	UniRef90	UniRef90_UPI0014304E05	site-specific DNA-methyltransferase	NA
UHGV-0080074_47	eggNOG-mapper	1123511.KB905857_gene1684	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0080074_47	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0080074_47	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0080074_47	COG	COG0863	DNA modification methylase	NA
UHGV-0080074_47	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0080074_49	PHROG	phrog_6215	glutathionylspermidine synthase	moron, auxiliary metabolic gene and host takeover
UHGV-0080074_49	UniRef90	UniRef90_UPI00142F43E1	glutathionylspermidine synthase family protein	NA
UHGV-0080074_49	eggNOG-mapper	626939.HMPREF9443_00807	Glutathionylspermidine synthase	NA
UHGV-0080074_49	Pfam	PF03738	Glutathionylspermidine synthase preATP-grasp	GSP_synth
UHGV-0080074_49	COG	COG0754	Glutathionylspermidine synthase, CHAP domain	NA
UHGV-0080074_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0080074_51	PHROG	phrog_291	endolysin	lysis
UHGV-0080074_51	UniRef90	UniRef90_UPI00142FE002	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0080074_51	eggNOG-mapper	1122216.AUHW01000006_gene367	Glycosyl hydrolase family 25	NA
UHGV-0080074_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0080074_51	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0080074_51	Structural annotation	PF01183, NF008377, COG3757	NA	NA
UHGV-0080074_56	eggNOG-mapper	649747.HMPREF0083_04672	NA	NA
UHGV-0080074_56	AcrCatalog	cluster_46037	NA	NA
UHGV-0080074_56	Structural annotation	PF08455	NA	NA
UHGV-0080074_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080074_58	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0080074_58	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080074_58	UniRef90	UniRef90_UPI0003F88C27	GNAT family N-acetyltransferase	NA
UHGV-0080074_58	eggNOG-mapper	1211817.CCAT010000049_gene2439	SNF2 family N-terminal domain	NA
UHGV-0080074_58	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0080074_58	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0080074_58	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0080074_58	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0080074_58	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0080074_59	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0080074_59	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0080074_59	UniRef90	UniRef90_UPI00058F2197	NA	NA
UHGV-0080074_59	eggNOG-mapper	1211817.CCAT010000049_gene2441	NA	NA
UHGV-0080074_59	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0080074_59	Pfam	PF11922	NA	DUF3440
UHGV-0080074_59	COG	COG3969	NA	NA
UHGV-0080074_59	Structural annotation	PF11922, PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0080074_60	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0080074_60	UniRef90	UniRef90_A0A2S0M7Z1	Chromosome partitioning protein ParB	NA
UHGV-0080074_60	eggNOG-mapper	476272.RUMHYD_02914	ParB-like nuclease domain	NA
UHGV-0080074_60	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0080074_60	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0080074_60	Structural annotation	PF02195, PF18579, TIGR04285, COG1475	NA	NA