UHGV-0080122

Genome information

Genome length 22,055 bps

CDS count 40

Completeness 67.80% (medium-quality)

geNomad score 0.9552

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080122
vOTU ID	vOTU-031291
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_164984
BioSample	SAMEA3136700
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9552
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.8
Jumbo phage	No

Genome content
Genome length	22,055 bps
GC content	27.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	86.34%
Average CDS length	477.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080122_1	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080122_1	UniRef90	UniRef90_UPI0014858467	HNH endonuclease	NA
UHGV-0080122_1	eggNOG-mapper	634956.Geoth_0783	HNH endonuclease	NA
UHGV-0080122_1	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0080122_1	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0080122_1	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0080122_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0080122_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080122_2	PHROG	phrog_3180	Arc-like repressor	transcription regulation
UHGV-0080122_2	UniRef90	UniRef90_A0A1V4J037	Ribbon-helix-helix domain protein	NA
UHGV-0080122_2	eggNOG-mapper	86416.Clopa_1906	Ribbon-helix-helix domain	NA
UHGV-0080122_2	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0080122_2	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0080122_3	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0080122_3	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080122_3	UniRef90	UniRef90_A0A1I3QJN8	HNH endonuclease	NA
UHGV-0080122_3	eggNOG-mapper	768710.DesyoDRAFT_1275	HNH nucleases	NA
UHGV-0080122_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0080122_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080122_5	PHROG	phrog_9079	NA	unknown function
UHGV-0080122_5	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0080122_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080122_6	UniRef90	UniRef90_UPI0007BBAD29	transcriptional regulator	NA
UHGV-0080122_6	eggNOG-mapper	1151292.QEW_0398	sigma factor activity	NA
UHGV-0080122_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0080122_6	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0080122_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080122_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080122_11	UniRef90	UniRef90_UPI0011060A1D	single-stranded DNA-binding protein	NA
UHGV-0080122_11	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0080122_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080122_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080122_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080122_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080122_11	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0080122_12	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080122_12	UniRef90	UniRef90_A0A410PPK7	HTH myb-type domain-containing protein	NA
UHGV-0080122_12	eggNOG-mapper	756499.Desde_1065	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0080122_12	Pfam	PF00249	Myb-like DNA-binding domain	Myb_DNA-binding
UHGV-0080122_12	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0080122_12	Structural annotation	PF02796, NF040595	NA	NA
UHGV-0080122_14	PHROG	phrog_5164	NA	unknown function
UHGV-0080122_18	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0080122_18	UniRef90	UniRef90_A0A8F1W4U6	Rha family transcriptional regulator	NA
UHGV-0080122_18	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-0080122_18	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0080122_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0080122_18	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0080122_18	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0080122_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0080122_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0080122_23	UniRef90	UniRef90_UPI0018AC7344	AAA family ATPase	NA
UHGV-0080122_23	eggNOG-mapper	596315.HMPREF0634_0384	DNA helicase	NA
UHGV-0080122_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0080122_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0080122_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0080122_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0080122_24	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080122_24	UniRef90	UniRef90_A0A1G9PJ92	Phg_2220_C domain-containing protein	NA
UHGV-0080122_24	eggNOG-mapper	1476973.JMMB01000007_gene2169	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0080122_24	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0080122_24	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0080122_25	PHROG	phrog_7338	NA	unknown function
UHGV-0080122_25	UniRef90	UniRef90_UPI0018A94BC8	DNA-binding protein	NA
UHGV-0080122_25	eggNOG-mapper	1443125.Z962_07495	Helix-turn-helix domain	NA
UHGV-0080122_25	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0080122_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080122_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0080122_26	UniRef90	UniRef90_A0A1C5YJQ3	Predicted transcriptional regulator	NA
UHGV-0080122_26	eggNOG-mapper	431943.CKL_2946	sequence-specific DNA binding	NA
UHGV-0080122_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080122_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080122_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080122_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0080122_27	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0080122_27	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0080122_27	UniRef90	UniRef90_UPI0018AB7904	helix-turn-helix domain-containing protein	NA
UHGV-0080122_27	eggNOG-mapper	289376.THEYE_A0334	sequence-specific DNA binding	NA
UHGV-0080122_27	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080122_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080122_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080122_28	KOfam	K14059	int; integrase	NA
UHGV-0080122_28	PHROG	phrog_1	integrase	integration and excision
UHGV-0080122_28	UniRef90	UniRef90_UPI0018AB7A9A	site-specific integrase	NA
UHGV-0080122_28	eggNOG-mapper	1151292.QEW_3771	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0080122_28	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0080122_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080122_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080122_28	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0080122_29	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0080122_29	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0080122_29	UniRef90	UniRef90_UPI0015A7FF1D	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0080122_29	eggNOG-mapper	445973.CLOBAR_02234	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0080122_29	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0080122_29	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0080122_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0080122_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0080122_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0080122_30	UniRef90	UniRef90_UPI0018AA4B05	Clp protease ClpP	NA
UHGV-0080122_30	eggNOG-mapper	1121929.KB898693_gene154	Serine dehydrogenase proteinase	NA
UHGV-0080122_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0080122_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0080122_31	UniRef90	UniRef90_A0A498CNG4	Phage major capsid protein	NA
UHGV-0080122_31	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-0080122_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080122_32	PHROG	phrog_32441	NA	unknown function
UHGV-0080122_32	UniRef90	UniRef90_UPI0012B5C046	J domain-containing protein	NA
UHGV-0080122_32	eggNOG-mapper	1461580.CCAS010000067_gene4025	COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0080122_32	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0080122_32	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0080122_33	PHROG	phrog_1974	NA	unknown function
UHGV-0080122_33	UniRef90	UniRef90_A0A371ISD9	Nucleoid-associated protein	NA
UHGV-0080122_33	eggNOG-mapper	1301100.HG529375_gene4038	37-kD nucleoid-associated bacterial protein	NA
UHGV-0080122_33	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0080122_33	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0080122_33	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0080122_34	PHROG	phrog_824	NA	unknown function
UHGV-0080122_34	UniRef90	UniRef90_UPI001105A33E	VRR-NUC domain-containing protein	NA
UHGV-0080122_34	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0080122_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0080122_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080122_35	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0080122_35	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0080122_35	Structural annotation	PF21578	NA	NA
UHGV-0080122_37	UniRef90	UniRef90_UPI001105B88F	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0080122_37	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0080122_37	COG	COG1158	Transcription termination factor Rho	NA
UHGV-0080122_38	PHROG	phrog_4370	excisionase	integration and excision
UHGV-0080122_38	UniRef90	UniRef90_A0A1G9U323	DNA binding domain-containing protein, excisionase family	NA
UHGV-0080122_38	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0080122_40	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0080122_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0080122_40	UniRef90	UniRef90_A0A1C6GW92	Predicted transcriptional regulator	NA
UHGV-0080122_40	eggNOG-mapper	1095750.HMPREF9970_1686	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080122_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080122_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080122_40	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA