UHGV-0080144

Genome information

Genome length 40,556 bps

CDS count 67

Completeness 91.24% (high-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080144
vOTU ID	vOTU-013432
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_160253
BioSample	SAMEA3136625
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	86.64
Jumbo phage	No

Genome content
Genome length	40,556 bps
GC content	32.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.51%
Average CDS length	558.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080144_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080144_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0080144_1	UniRef90	UniRef90_UPI000E453064	recombinase family protein	NA
UHGV-0080144_1	eggNOG-mapper	438780.D2KRD2_9CAUD	Recombinase	NA
UHGV-0080144_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080144_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0080144_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0080144_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0080144_2	PHROG	phrog_16443	NA	unknown function
UHGV-0080144_2	AcrCatalog	cluster_1135	NA	NA
UHGV-0080144_3	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0080144_3	UniRef90	UniRef90_UPI00189A0FE4	Ltp family lipoprotein	NA
UHGV-0080144_3	eggNOG-mapper	1408823.AXUS01000009_gene1981	Host cell surface-exposed lipoprotein	NA
UHGV-0080144_3	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0080144_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0080144_3	Structural annotation	PF07553, MF_01114, NF001062, COG2137	NA	NA
UHGV-0080144_4	PHROG	phrog_87	metallo-protease	other
UHGV-0080144_4	UniRef90	UniRef90_UPI00136F3ADB	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0080144_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080144_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080144_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080144_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080144_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080144_5	UniRef90	UniRef90_A0JQI2	Phage transcriptional regulator, Cro/CI family	NA
UHGV-0080144_5	eggNOG-mapper	768486.EHR_00850	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080144_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080144_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080144_5	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0080144_6	PHROG	phrog_1337	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080144_6	UniRef90	UniRef90_UPI0002F3D68F	antirepressor	NA
UHGV-0080144_6	eggNOG-mapper	1235801.C822_00110	NA	NA
UHGV-0080144_6	Structural annotation	PF21291, TIGR04111, COG3655	NA	NA
UHGV-0080144_7	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0080144_7	UniRef90	UniRef90_UPI000E446C3D	Rha family transcriptional regulator	NA
UHGV-0080144_7	eggNOG-mapper	565664.EFXG_01142	ORF6C domain	NA
UHGV-0080144_7	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0080144_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0080144_7	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0080144_7	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0080144_7	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0080144_8	PHROG	phrog_8594	NA	unknown function
UHGV-0080144_8	UniRef90	UniRef90_D7RWL9	Gp36	NA
UHGV-0080144_8	eggNOG-mapper	701521.PECL_592	NA	NA
UHGV-0080144_14	PHROG	phrog_674	NA	unknown function
UHGV-0080144_14	UniRef90	UniRef90_UPI00137029CC	NA	NA
UHGV-0080144_14	eggNOG-mapper	663241.C9E2N0_9CAUD	NA	NA
UHGV-0080144_14	Pfam	PF07083	NA	DUF1351
UHGV-0080144_14	Structural annotation	PF07083	NA	NA
UHGV-0080144_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080144_16	UniRef90	UniRef90_A0A1V9RE99	Nucleotide-binding protein	NA
UHGV-0080144_16	eggNOG-mapper	387344.LVIS_1132	AAA domain	NA
UHGV-0080144_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-0080144_16	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0080144_16	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0080144_17	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080144_17	UniRef90	UniRef90_UPI001896DB9F	NA	NA
UHGV-0080144_17	eggNOG-mapper	1158604.I591_01790	NA	NA
UHGV-0080144_17	Pfam	PF05037	NA	DUF669
UHGV-0080144_17	Structural annotation	PF05037, NF005241, COG0629	NA	NA
UHGV-0080144_18	PHROG	phrog_398	NA	unknown function
UHGV-0080144_18	UniRef90	UniRef90_UPI000BB0124B	putative HNHc nuclease	NA
UHGV-0080144_18	eggNOG-mapper	1423724.BAMM01000020_gene1807	Putative HNHc nuclease	NA
UHGV-0080144_18	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0080144_18	Structural annotation	PF16784	NA	NA
UHGV-0080144_19	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0080144_19	UniRef90	UniRef90_A0A1V9RE87	HTH cro/C1-type domain-containing protein	NA
UHGV-0080144_19	eggNOG-mapper	1501230.ET33_29280	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0080144_19	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080144_19	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0080144_19	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0080144_20	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080144_20	UniRef90	UniRef90_UPI0015C4C593	conserved phage C-terminal domain-containing protein	NA
UHGV-0080144_20	eggNOG-mapper	387344.LVIS_1129	Helix-turn-helix domain	NA
UHGV-0080144_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0080144_20	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0080144_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080144_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0080144_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0080144_21	UniRef90	UniRef90_A0A1V9RDT9	SF4 helicase domain-containing protein	NA
UHGV-0080144_21	eggNOG-mapper	1423724.BAMM01000020_gene1809	DnaB-like helicase C terminal domain	NA
UHGV-0080144_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0080144_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0080144_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0080144_22	eggNOG-mapper	1423724.BAMM01000020_gene1810	NA	NA
UHGV-0080144_23	PHROG	phrog_5403	NA	unknown function
UHGV-0080144_23	UniRef90	UniRef90_A0A4S2EDH9	DNA primase	NA
UHGV-0080144_23	eggNOG-mapper	1423724.BAMM01000020_gene1814	NA	NA
UHGV-0080144_25	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080144_25	UniRef90	UniRef90_A0A8F5E951	NA	NA
UHGV-0080144_25	eggNOG-mapper	1423724.BAMM01000020_gene1814	NA	NA
UHGV-0080144_25	Pfam	PF06356	NA	DUF1064
UHGV-0080144_25	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0080144_26	Structural annotation	PF08207	NA	NA
UHGV-0080144_27	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0080144_27	UniRef90	UniRef90_A0A379B138	EAL domain-containing protein	NA
UHGV-0080144_27	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-0080144_27	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0080144_28	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080144_28	UniRef90	UniRef90_A0A2G4RJF6	HNH endonuclease	NA
UHGV-0080144_28	eggNOG-mapper	243275.TDE_1153	HNH endonuclease	NA
UHGV-0080144_28	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0080144_28	Structural annotation	PF13392	NA	NA
UHGV-0080144_29	KOfam	K14059	int; integrase	NA
UHGV-0080144_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0080144_29	UniRef90	UniRef90_A0A2G4RJ91	Site-specific integrase	NA
UHGV-0080144_29	eggNOG-mapper	525309.HMPREF0494_1797	Belongs to the 'phage' integrase family	NA
UHGV-0080144_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080144_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080144_29	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0080144_31	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0080144_31	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0080144_31	UniRef90	UniRef90_A0JQK7	N6_Mtase domain-containing protein	NA
UHGV-0080144_31	eggNOG-mapper	349123.Lreu23DRAFT_3890	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0080144_31	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0080144_31	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0080144_31	Structural annotation	PF01596, TIGR02469, COG3963	NA	NA
UHGV-0080144_32	PHROG	phrog_13389	NA	unknown function
UHGV-0080144_32	eggNOG-mapper	1321779.HMPREF1984_01328	NA	NA
UHGV-0080144_32	Structural annotation	PF11645	NA	NA
UHGV-0080144_35	UniRef90	UniRef90_UPI00136AE63F	helix-turn-helix domain-containing protein	NA
UHGV-0080144_35	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-0080144_41	PHROG	phrog_28363	NA	unknown function
UHGV-0080144_45	PHROG	phrog_36988	NA	unknown function
UHGV-0080144_45	UniRef90	UniRef90_A0A1D7TSQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-0080144_45	Structural annotation	PF08667, MF_00535, NF010465, COG1396	NA	NA
UHGV-0080144_48	PHROG	phrog_918	NA	unknown function
UHGV-0080144_48	UniRef90	UniRef90_UPI001370EB75	NA	NA
UHGV-0080144_48	eggNOG-mapper	226185.EF_1459	NA	NA
UHGV-0080144_48	Pfam	PF19791	NA	DUF6275
UHGV-0080144_48	Structural annotation	PF19791	NA	NA
UHGV-0080144_50	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080144_50	UniRef90	UniRef90_UPI00136E3FC9	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0080144_50	eggNOG-mapper	1069534.LRC_07220	NA	NA
UHGV-0080144_50	Structural annotation	PF07374, MF_00674, NF001066, COG2739	NA	NA
UHGV-0080144_52	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0080144_52	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080144_52	UniRef90	UniRef90_A0JQM1	Phage endonuclease	NA
UHGV-0080144_52	eggNOG-mapper	411465.PEPMIC_00028	HNH nucleases	NA
UHGV-0080144_52	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0080144_52	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080144_52	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0080144_53	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0080144_53	UniRef90	UniRef90_A0JQM2	Phage Terminase Small Subunit	NA
UHGV-0080144_53	eggNOG-mapper	431943.CKL_4070	Phage terminase, small subunit	NA
UHGV-0080144_53	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0080144_53	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0080144_53	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0080144_53	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0080144_54	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0080144_54	UniRef90	UniRef90_A0JQM3	Terminase large subunit	NA
UHGV-0080144_54	eggNOG-mapper	1348908.KI518589_gene2540	Terminase	NA
UHGV-0080144_54	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0080144_54	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0080144_54	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0080144_54	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0080144_55	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080144_55	UniRef90	UniRef90_A0JQM4	Portal protein	NA
UHGV-0080144_55	eggNOG-mapper	272562.CA_C1894	Phage portal protein, HK97 family	NA
UHGV-0080144_55	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080144_55	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0080144_55	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0080144_55	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080144_56	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0080144_56	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0080144_56	UniRef90	UniRef90_A0JQM5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0080144_56	eggNOG-mapper	349123.Lreu23DRAFT_3158	Belongs to the peptidase S14 family	NA
UHGV-0080144_56	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0080144_56	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0080144_56	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0080144_57	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080144_57	UniRef90	UniRef90_A0JQM6	Phage prohead protease	NA
UHGV-0080144_57	eggNOG-mapper	768486.EHR_00635	Phage capsid family	NA
UHGV-0080144_57	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080144_57	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080144_57	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080144_57	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080144_58	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0080144_58	UniRef90	UniRef90_A0JQM7	Phage DNA packaging	NA
UHGV-0080144_58	eggNOG-mapper	411465.PEPMIC_00008	Phage gp6-like head-tail connector protein	NA
UHGV-0080144_58	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0080144_58	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0080144_59	UniRef90	UniRef90_A0JQM8	Phage head-tail joining protein	NA
UHGV-0080144_59	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0080144_60	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0080144_60	UniRef90	UniRef90_A0JQM9	Phage head-tail joining protein	NA
UHGV-0080144_60	eggNOG-mapper	1408422.JHYF01000021_gene976	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0080144_60	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0080144_60	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0080144_60	Structural annotation	TIGR01725	NA	NA
UHGV-0080144_61	UniRef90	UniRef90_A0JQN0	Phage head-tail joining protein	NA
UHGV-0080144_62	PHROG	phrog_88	major tail protein	tail
UHGV-0080144_62	UniRef90	UniRef90_A0JQN1	Phage major tail protein	NA
UHGV-0080144_62	eggNOG-mapper	1500386.A0A060AKE9_9CAUD	Pfam:Phage_TTP_1	NA
UHGV-0080144_62	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0080144_62	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0080144_63	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0080144_64	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0080144_64	UniRef90	UniRef90_A0A1V9U1J6	Phage tail tape measure protein	NA
UHGV-0080144_64	eggNOG-mapper	862514.HMPREF0623_0296	Phage tail tape measure protein TP901	NA
UHGV-0080144_64	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0080144_64	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0080144_64	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0080144_64	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0080144_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0080144_65	UniRef90	UniRef90_UPI000A2D25C0	phage tail family protein	NA
UHGV-0080144_65	eggNOG-mapper	349123.Lreu23DRAFT_3168	Phage tail protein	NA
UHGV-0080144_65	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0080144_65	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0080144_66	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0080144_66	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0080144_66	UniRef90	UniRef90_A0A222W278	Peptidase M23	NA
UHGV-0080144_66	eggNOG-mapper	1423755.BAML01000004_gene372	peptidase	NA
UHGV-0080144_66	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0080144_66	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0080144_66	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0080144_66	Structural annotation	PF06605, PF18994, TIGR01665, COG3500, COG3953	NA	NA
UHGV-0080144_67	KOfam	K07273	acm; lysozyme	NA
UHGV-0080144_67	PHROG	phrog_291	endolysin	lysis
UHGV-0080144_67	eggNOG-mapper	1605.Lani381_0871	Prophage endopeptidase tail	NA
UHGV-0080144_67	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0080144_67	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA