UHGV-0080156

Genome information

Genome length 42,061 bps

CDS count 64

Completeness 97.69% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080156
vOTU ID	vOTU-066007
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152368
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.79
Jumbo phage	No

Genome content
Genome length	42,061 bps
GC content	52.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.24%
Average CDS length	589.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080156_1	PHROG	phrog_27197	NA	unknown function
UHGV-0080156_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0080156_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0080156_4	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0080156_5	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0080156_5	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0080156_5	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0080156_5	Structural annotation	PF05772	NA	NA
UHGV-0080156_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080156_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080156_6	UniRef90	UniRef90_UPI00187432A3	single-stranded DNA-binding protein	NA
UHGV-0080156_6	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0080156_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080156_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080156_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080156_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080156_6	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080156_7	PHROG	phrog_4973	NA	unknown function
UHGV-0080156_7	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0080156_7	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0080156_7	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0080156_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080156_8	UniRef90	UniRef90_UPI0006877B23	helix-turn-helix domain-containing protein	NA
UHGV-0080156_8	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0080156_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080156_8	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0080156_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0080156_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0080156_9	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0080156_9	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0080156_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0080156_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0080156_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0080156_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0080156_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0080156_12	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080156_12	UniRef90	UniRef90_UPI001C01A488	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0080156_12	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0080156_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0080156_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0080156_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0080156_17	PHROG	phrog_9958	NA	unknown function
UHGV-0080156_17	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0080156_17	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0080156_17	Structural annotation	PF19789	NA	NA
UHGV-0080156_18	Structural annotation	PF16069, NF040508	NA	NA
UHGV-0080156_22	PHROG	phrog_924	NA	unknown function
UHGV-0080156_22	UniRef90	UniRef90_UPI00112F9A9E	NA	NA
UHGV-0080156_22	Pfam	PF04448	NA	DUF551
UHGV-0080156_22	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0080156_24	Structural annotation	PF08281, MF_00674, TIGR01636	NA	NA
UHGV-0080156_25	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0080156_26	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0080156_27	PHROG	phrog_16490	NA	unknown function
UHGV-0080156_27	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0080156_28	PHROG	phrog_22984	NA	unknown function
UHGV-0080156_29	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0080156_30	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0080156_30	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0080156_31	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0080156_31	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0080156_33	PHROG	phrog_1129	holin	lysis
UHGV-0080156_33	UniRef90	UniRef90_A0A1G9U2I2	Phage holin family Hol44, holin superfamily V	NA
UHGV-0080156_33	eggNOG-mapper	556261.HMPREF0240_01266	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0080156_33	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0080156_33	Structural annotation	PF16079	NA	NA
UHGV-0080156_34	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0080156_35	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0080156_35	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0080156_35	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0080156_35	eggNOG-mapper	1122137.AQXF01000004_gene1863	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0080156_35	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0080156_35	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0080156_35	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0080156_37	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0080156_37	Structural annotation	NF040910	NA	NA
UHGV-0080156_39	Structural annotation	PF00754, MF_00813, TIGR02961, COG5156	NA	NA
UHGV-0080156_40	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0080156_40	PHROG	phrog_819	tail protein	tail
UHGV-0080156_40	eggNOG-mapper	665956.HMPREF1032_03918	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	NA
UHGV-0080156_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0080156_41	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0080156_41	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0080156_41	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0080156_42	PHROG	phrog_13046	NA	unknown function
UHGV-0080156_42	eggNOG-mapper	1232449.BAHV02000016_gene1817	NA	NA
UHGV-0080156_42	Structural annotation	PF20387	NA	NA
UHGV-0080156_43	PHROG	phrog_156	portal protein	head and packaging
UHGV-0080156_43	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0080156_43	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0080156_45	PHROG	phrog_371	major head protein	head and packaging
UHGV-0080156_45	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0080156_45	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080156_46	PHROG	phrog_35275	NA	unknown function
UHGV-0080156_46	eggNOG-mapper	1226322.HMPREF1545_03846	NA	NA
UHGV-0080156_48	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0080156_48	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0080156_48	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0080156_48	eggNOG-mapper	316274.Haur_0564	NA	NA
UHGV-0080156_48	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0080156_48	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0080156_50	UniRef90	UniRef90_UPI0018758D33	NA	NA
UHGV-0080156_50	Pfam	PF08681	NA	DUF1778
UHGV-0080156_50	Structural annotation	PF03869, NF040976, COG4453	NA	NA
UHGV-0080156_51	PHROG	phrog_15863	NA	unknown function
UHGV-0080156_51	UniRef90	UniRef90_UPI0018766E78	J domain-containing protein	NA
UHGV-0080156_51	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0080156_51	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0080156_52	Structural annotation	PF18830	NA	NA
UHGV-0080156_54	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0080156_54	UniRef90	UniRef90_UPI0010565CFE	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0080156_54	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0080156_54	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0080156_57	KOfam	K14059	int; integrase	NA
UHGV-0080156_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0080156_57	UniRef90	UniRef90_UPI001F166C84	tyrosine-type recombinase/integrase	NA
UHGV-0080156_57	eggNOG-mapper	693746.OBV_25530	Phage integrase family	NA
UHGV-0080156_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080156_57	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080156_57	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0080156_58	eggNOG-mapper	1410653.JHVC01000032_gene1036	domain protein	NA
UHGV-0080156_58	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0080156_59	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0080156_60	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080156_60	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080156_60	UniRef90	UniRef90_A0A4Z0XXV8	HTH-type transcriptional regulator Xre	NA
UHGV-0080156_60	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080156_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080156_60	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0080156_60	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0080156_61	UniRef90	UniRef90_UPI0002F09A0C	helix-turn-helix domain-containing protein	NA
UHGV-0080156_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080156_61	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0080156_62	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0080156_63	Structural annotation	PF17259	NA	NA
UHGV-0080156_64	PHROG	phrog_4433	NA	unknown function
UHGV-0080156_64	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0080156_64	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0080156_64	COG	COG5164	Transcription elongation factor SPT5	NA