UHGV-0080162

Genome information

Genome length 41,503 bps

CDS count 76

Completeness 99.95% (high-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080162
vOTU ID	vOTU-066641
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152370
BioSample	SAMEA2784496
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.99
Jumbo phage	No

Genome content
Genome length	41,503 bps
GC content	54.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.21%
Average CDS length	496.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080162_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0080162_3	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0080162_3	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-0080162_3	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0080162_3	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0080162_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0080162_3	COG	COG0863	DNA modification methylase	NA
UHGV-0080162_3	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0080162_5	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080162_5	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0080162_5	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0080162_5	Pfam	PF06356	NA	DUF1064
UHGV-0080162_5	Structural annotation	PF06356	NA	NA
UHGV-0080162_7	PHROG	phrog_9804	NA	unknown function
UHGV-0080162_7	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0080162_7	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0080162_7	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0080162_7	Structural annotation	PF11417	NA	NA
UHGV-0080162_8	PHROG	phrog_15768	NA	unknown function
UHGV-0080162_8	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0080162_8	eggNOG-mapper	445970.ALIPUT_02689	DNA-binding transcription factor activity	NA
UHGV-0080162_8	Pfam	PF19808	NA	DUF6291
UHGV-0080162_8	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0080162_8	Structural annotation	PF19808	NA	NA
UHGV-0080162_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080162_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080162_10	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0080162_10	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0080162_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080162_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080162_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080162_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080162_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0080162_11	PHROG	phrog_7566	NA	unknown function
UHGV-0080162_11	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0080162_11	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0080162_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0080162_12	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0080162_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0080162_12	Structural annotation	PF05772	NA	NA
UHGV-0080162_13	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080162_13	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0080162_13	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0080162_13	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0080162_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0080162_14	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0080162_14	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0080162_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0080162_14	Structural annotation	PF05565	NA	NA
UHGV-0080162_19	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0080162_19	eggNOG-mapper	1514668.JOOA01000002_gene1643	NA	NA
UHGV-0080162_19	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0080162_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080162_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0080162_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080162_20	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0080162_21	Structural annotation	PF03885	NA	NA
UHGV-0080162_24	PHROG	phrog_301	secreted protein	other
UHGV-0080162_24	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0080162_24	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0080162_25	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0080162_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080162_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080162_25	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0080162_26	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080162_26	PHROG	phrog_95	integrase	integration and excision
UHGV-0080162_26	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0080162_26	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0080162_26	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080162_26	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0080162_26	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0080162_26	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0080162_27	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0080162_28	Structural annotation	PF12510	NA	NA
UHGV-0080162_29	PHROG	phrog_20016	NA	unknown function
UHGV-0080162_29	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0080162_29	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0080162_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0080162_30	PHROG	phrog_16490	NA	unknown function
UHGV-0080162_30	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0080162_31	PHROG	phrog_22984	NA	unknown function
UHGV-0080162_32	PHROG	phrog_21718	NA	unknown function
UHGV-0080162_32	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0080162_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080162_35	PHROG	phrog_1493	endolysin	lysis
UHGV-0080162_35	UniRef90	UniRef90_A0A810PUG7	SPOR domain-containing protein	NA
UHGV-0080162_35	eggNOG-mapper	994573.T472_0212035	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080162_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0080162_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0080162_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080162_35	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0080162_36	PHROG	phrog_881	holin	lysis
UHGV-0080162_36	UniRef90	UniRef90_A0A8D9PDR9	Holin	NA
UHGV-0080162_36	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0080162_36	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0080162_36	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0080162_37	PHROG	phrog_4105	NA	unknown function
UHGV-0080162_37	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0080162_37	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0080162_38	PHROG	phrog_38044	NA	unknown function
UHGV-0080162_38	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0080162_38	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0080162_38	Structural annotation	PF19079	NA	NA
UHGV-0080162_40	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0080162_40	Structural annotation	PF07238	NA	NA
UHGV-0080162_41	UniRef90	UniRef90_A0A856HZ25	Tail fiber domain-containing protein	NA
UHGV-0080162_41	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0080162_41	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0080162_42	PHROG	phrog_6616	tail protein	tail
UHGV-0080162_42	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0080162_42	Structural annotation	PF16466, TIGR01603, COG3500	NA	NA
UHGV-0080162_43	PHROG	phrog_1194	NA	unknown function
UHGV-0080162_43	eggNOG-mapper	1235797.C816_04181	NA	NA
UHGV-0080162_43	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0080162_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080162_44	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0080162_44	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0080162_44	COG	COG1511	NA	NA
UHGV-0080162_44	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0080162_46	PHROG	phrog_706	NA	unknown function
UHGV-0080162_46	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0080162_46	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0080162_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080162_46	Structural annotation	PF06854	NA	NA
UHGV-0080162_47	PHROG	phrog_11299	NA	unknown function
UHGV-0080162_47	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0080162_47	Structural annotation	PF10666	NA	NA
UHGV-0080162_48	PHROG	phrog_3099	NA	unknown function
UHGV-0080162_48	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0080162_48	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0080162_49	PHROG	phrog_3266	tail completion	connector
UHGV-0080162_49	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0080162_49	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0080162_49	Structural annotation	PF12691	NA	NA
UHGV-0080162_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080162_50	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0080162_50	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0080162_50	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0080162_50	Structural annotation	PF11114	NA	NA
UHGV-0080162_51	PHROG	phrog_3366	NA	unknown function
UHGV-0080162_51	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0080162_51	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0080162_52	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080162_52	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0080162_53	PHROG	phrog_544	major head protein	head and packaging
UHGV-0080162_53	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0080162_53	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0080162_53	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0080162_54	Structural annotation	PF06810	NA	NA
UHGV-0080162_55	Structural annotation	PF18152	NA	NA
UHGV-0080162_57	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080162_57	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0080162_57	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0080162_57	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080162_57	COG	COG2369	NA	NA
UHGV-0080162_57	Structural annotation	PF06152	NA	NA
UHGV-0080162_58	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080162_58	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0080162_58	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0080162_58	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080162_58	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080162_59	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080162_59	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0080162_59	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0080162_59	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0080162_59	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080162_59	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080162_59	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080162_59	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080162_61	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0080162_61	PHROG	phrog_21498	NA	unknown function
UHGV-0080162_61	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0080162_61	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0080162_61	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0080162_61	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0080162_61	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0080162_61	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0080162_62	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080162_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080162_62	UniRef90	UniRef90_A0A8D9PDC4	Repressor protein	NA
UHGV-0080162_62	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0080162_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080162_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080162_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080162_63	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0080162_65	PHROG	phrog_22543	NA	unknown function
UHGV-0080162_65	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0080162_68	PHROG	phrog_3136	NA	unknown function
UHGV-0080162_69	PHROG	phrog_3136	NA	unknown function
UHGV-0080162_69	Pfam	PF04266	ASCH domain	ASCH
UHGV-0080162_70	PHROG	phrog_38832	NA	unknown function
UHGV-0080162_70	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0080162_71	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0080162_71	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0080162_71	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0080162_71	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0080162_71	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0080162_71	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080162_72	eggNOG-mapper	1232443.BAIA02000103_gene2903	NA	NA
UHGV-0080162_74	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0080162_74	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0080162_74	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-0080162_74	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0080162_74	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0080162_74	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0080162_74	COG	COG0863	DNA modification methylase	NA
UHGV-0080162_74	Structural annotation	PF01555, NF010253, COG0863	NA	NA