UHGV-0080185

Genome information

Genome length 22,183 bps

CDS count 29

Completeness 57.20% (medium-quality)

geNomad score 0.9801

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080185
vOTU ID	vOTU-021257
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151417
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9801
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	10.01
Jumbo phage	No

Genome content
Genome length	22,183 bps
GC content	45.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	92.40%
Average CDS length	710.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080185_1	UniRef90	UniRef90_A0A3R6PTD8	NA	NA
UHGV-0080185_1	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0080185_1	Pfam	PF04448	NA	DUF551
UHGV-0080185_1	Structural annotation	NF041588	NA	NA
UHGV-0080185_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080185_2	UniRef90	UniRef90_A0A3R6X4Q7	RNA polymerase subunit sigma-70	NA
UHGV-0080185_2	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0080185_2	Structural annotation	PF02996	NA	NA
UHGV-0080185_3	eggNOG-mapper	1220589.CD32_01770	NA	NA
UHGV-0080185_3	AcrCatalog	cluster_38765	NA	NA
UHGV-0080185_3	Structural annotation	PF15931, NF001462, COG2974	NA	NA
UHGV-0080185_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0080185_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0080185_6	UniRef90	UniRef90_A0A3R6M7Q6	Terminase small subunit	NA
UHGV-0080185_6	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0080185_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0080185_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0080185_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0080185_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080185_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0080185_7	UniRef90	UniRef90_A0A416KE31	Terminase	NA
UHGV-0080185_7	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0080185_7	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080185_7	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080185_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080185_8	UniRef90	UniRef90_A0A3R6LPA5	Capsid protein	NA
UHGV-0080185_8	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0080185_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080185_9	PHROG	phrog_25639	NA	unknown function
UHGV-0080185_9	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0080185_10	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080185_10	UniRef90	UniRef90_A0A416KE36	Minor capsid protein	NA
UHGV-0080185_10	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0080185_10	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080185_10	COG	COG2369	NA	NA
UHGV-0080185_10	Structural annotation	PF06152	NA	NA
UHGV-0080185_12	PHROG	phrog_419	NA	unknown function
UHGV-0080185_12	eggNOG-mapper	1232449.BAHV02000016_gene1828	NA	NA
UHGV-0080185_12	Structural annotation	PF14083	NA	NA
UHGV-0080185_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0080185_13	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0080185_14	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080185_14	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-0080185_14	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0080185_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080185_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080185_15	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0080185_16	PHROG	phrog_8710	NA	unknown function
UHGV-0080185_16	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0080185_16	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0080185_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080185_17	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0080185_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0080185_18	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0080185_18	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0080185_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0080185_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0080185_19	PHROG	phrog_820	major tail protein	tail
UHGV-0080185_19	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0080185_19	COG	COG5492	NA	NA
UHGV-0080185_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080185_20	PHROG	phrog_8300	NA	unknown function
UHGV-0080185_20	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0080185_20	Structural annotation	PF06854	NA	NA
UHGV-0080185_21	PHROG	phrog_8355	NA	unknown function
UHGV-0080185_21	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-0080185_21	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0080185_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080185_21	Structural annotation	PF06854	NA	NA
UHGV-0080185_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080185_22	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0080185_22	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0080185_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0080185_22	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0080185_23	PHROG	phrog_1194	NA	unknown function
UHGV-0080185_23	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0080185_23	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0080185_24	PHROG	phrog_13879	NA	unknown function
UHGV-0080185_24	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0080185_24	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0080185_25	PHROG	phrog_18725	NA	unknown function
UHGV-0080185_25	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0080185_26	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0080185_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0080185_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0080185_29	UniRef90	UniRef90_A0A3R6TX05	Tyr recombinase domain-containing protein	NA
UHGV-0080185_29	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0080185_29	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0080185_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080185_29	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080185_29	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA