UHGV-0080259

Genome information

Genome length 25,033 bps

CDS count 44

Completeness 84.23% (medium-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080259
vOTU ID	vOTU-035531
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_163977
BioSample	SAMEA3136701
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.73
Jumbo phage	No

Genome content
Genome length	25,033 bps
GC content	56.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.13%
Average CDS length	539.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080259_1	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0080259_2	UniRef90	UniRef90_UPI001C03922B	excisionase family DNA-binding protein	NA
UHGV-0080259_2	eggNOG-mapper	1291050.JAGE01000002_gene3380	NA	NA
UHGV-0080259_2	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0080259_5	Structural annotation	PF19607	NA	NA
UHGV-0080259_8	PHROG	phrog_674	NA	unknown function
UHGV-0080259_8	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0080259_8	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0080259_8	Pfam	PF07083	NA	DUF1351
UHGV-0080259_8	Structural annotation	PF07083	NA	NA
UHGV-0080259_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0080259_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080259_9	UniRef90	UniRef90_UPI0006895D66	recombinase RecT	NA
UHGV-0080259_9	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0080259_9	Pfam	PF03837	RecT family	RecT
UHGV-0080259_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0080259_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0080259_9	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0080259_10	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0080259_10	UniRef90	UniRef90_R6LWZ4	Lactamase_B domain-containing protein	NA
UHGV-0080259_10	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0080259_10	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0080259_10	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0080259_10	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0080259_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080259_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080259_12	UniRef90	UniRef90_A0A316PSZ3	Single-stranded DNA-binding protein	NA
UHGV-0080259_12	eggNOG-mapper	1297617.JPJD01000076_gene1093	Single-strand binding protein family	NA
UHGV-0080259_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080259_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080259_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080259_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080259_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0080259_13	PHROG	phrog_16304	NA	unknown function
UHGV-0080259_13	Pfam	PF19808	NA	DUF6291
UHGV-0080259_13	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0080259_13	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0080259_13	Structural annotation	PF19808	NA	NA
UHGV-0080259_14	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0080259_15	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080259_15	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0080259_15	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0080259_15	Pfam	PF06356	NA	DUF1064
UHGV-0080259_15	Structural annotation	PF06356	NA	NA
UHGV-0080259_18	eggNOG-mapper	910313.HMPREF9320_1544	Peptidase S24-like	NA
UHGV-0080259_18	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0080259_18	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080259_18	Structural annotation	PF13560, NF007257, COG1476	NA	NA
UHGV-0080259_22	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0080259_22	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0080259_23	PHROG	phrog_8680	NA	unknown function
UHGV-0080259_23	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0080259_23	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0080259_23	Pfam	PF14386	NA	DUF4417
UHGV-0080259_23	Structural annotation	PF14386	NA	NA
UHGV-0080259_24	PHROG	phrog_9479	NA	unknown function
UHGV-0080259_24	Structural annotation	PF15529	NA	NA
UHGV-0080259_25	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-0080259_25	UniRef90	UniRef90_UPI001CF819B6	terminase	NA
UHGV-0080259_25	eggNOG-mapper	679192.HMPREF9013_1308	NA	NA
UHGV-0080259_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080259_26	PHROG	phrog_10250	NA	unknown function
UHGV-0080259_26	UniRef90	UniRef90_A0A316PPL4	PBSX family phage terminase large subunit	NA
UHGV-0080259_26	eggNOG-mapper	877414.ATWA01000001_gene906	Terminase-like family	NA
UHGV-0080259_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080259_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080259_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080259_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080259_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0080259_27	UniRef90	UniRef90_A0A316PPQ6	Phage portal protein	NA
UHGV-0080259_27	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0080259_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080259_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0080259_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0080259_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0080259_28	UniRef90	UniRef90_R6J0C1	Phage_Mu_F domain-containing protein	NA
UHGV-0080259_28	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0080259_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0080259_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0080259_28	COG	COG2369	NA	NA
UHGV-0080259_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0080259_29	UniRef90	UniRef90_UPI001CEC2B18	minor capsid protein	NA
UHGV-0080259_29	eggNOG-mapper	888060.HMPREF9081_1553	cell adhesion	NA
UHGV-0080259_29	COG	COG2369	NA	NA
UHGV-0080259_30	Structural annotation	PF11344	NA	NA
UHGV-0080259_31	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0080259_31	UniRef90	UniRef90_A0A316RQZ9	Phage capsid protein	NA
UHGV-0080259_31	eggNOG-mapper	1499683.CCFF01000014_gene3909	NA	NA
UHGV-0080259_31	Pfam	PF14265	NA	DUF4355
UHGV-0080259_31	Structural annotation	PF14265	NA	NA
UHGV-0080259_32	PHROG	phrog_283	major head protein	head and packaging
UHGV-0080259_32	UniRef90	UniRef90_A0A1I2NUB2	p22 coat protein-gene protein 5	NA
UHGV-0080259_32	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0080259_32	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0080259_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080259_34	Structural annotation	PF05135	NA	NA
UHGV-0080259_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0080259_36	eggNOG-mapper	1235800.C819_00481	NA	NA
UHGV-0080259_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0080259_36	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0080259_37	Structural annotation	PF05657	NA	NA
UHGV-0080259_38	PHROG	phrog_158	major tail protein	tail
UHGV-0080259_38	UniRef90	UniRef90_R5YR40	Major tail protein putative	NA
UHGV-0080259_38	eggNOG-mapper	1280692.AUJL01000025_gene2074	Phage tail tube protein, TTP	NA
UHGV-0080259_38	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0080259_38	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0080259_39	Structural annotation	PF11836	NA	NA
UHGV-0080259_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080259_42	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0080259_42	COG	COG5412	Phage-related protein	NA
UHGV-0080259_43	PHROG	phrog_1194	NA	unknown function
UHGV-0080259_43	eggNOG-mapper	877414.ATWA01000001_gene917	NA	NA
UHGV-0080259_43	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0080259_44	PHROG	phrog_22212	NA	unknown function
UHGV-0080259_44	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0080259_44	COG	COG4733	Phage-related protein, tail protein J	NA