UHGV-0080274

Genome information

Genome length 36,131 bps

CDS count 57

Completeness 94.71% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080274
vOTU ID	vOTU-080853
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_154337
BioSample	SAMEA2784513
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.71% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.14
Jumbo phage	No

Genome content
Genome length	36,131 bps
GC content	47.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.16%
Average CDS length	595.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080274_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080274_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0080274_1	UniRef90	UniRef90_UPI0015E169A5	recombinase family protein	NA
UHGV-0080274_1	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0080274_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080274_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0080274_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0080274_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0080274_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0080274_2	UniRef90	UniRef90_UPI001D032E3A	NA	NA
UHGV-0080274_2	eggNOG-mapper	657322.FPR_11180	NA	NA
UHGV-0080274_2	Pfam	PF13711	NA	DUF4160
UHGV-0080274_2	Structural annotation	PF13711	NA	NA
UHGV-0080274_3	eggNOG-mapper	1410624.JNKK01000069_gene1367	NA	NA
UHGV-0080274_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0080274_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0080274_4	UniRef90	UniRef90_UPI001BC66AEE	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0080274_4	eggNOG-mapper	97139.C824_05961	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0080274_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0080274_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0080274_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0080274_5	PHROG	phrog_87	metallo-protease	other
UHGV-0080274_5	UniRef90	UniRef90_UPI0015D3F2DD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0080274_5	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0080274_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080274_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080274_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080274_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0080274_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080274_6	UniRef90	UniRef90_A0A1C5QQD0	Transcriptional regulator, y4mF family	NA
UHGV-0080274_6	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0080274_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080274_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080274_6	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080274_7	UniRef90	UniRef90_UPI00156EFEB1	helix-turn-helix domain-containing protein	NA
UHGV-0080274_7	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0080274_7	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0080274_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0080274_12	PHROG	phrog_3777	NA	unknown function
UHGV-0080274_12	UniRef90	UniRef90_UPI00142FF24A	NA	NA
UHGV-0080274_12	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0080274_12	Structural annotation	PF18441	NA	NA
UHGV-0080274_13	Structural annotation	PF19128	NA	NA
UHGV-0080274_15	UniRef90	UniRef90_UPI00156FCC15	helix-turn-helix domain-containing protein	NA
UHGV-0080274_15	Structural annotation	PF13384, COG1710	NA	NA
UHGV-0080274_16	PHROG	phrog_674	NA	unknown function
UHGV-0080274_16	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0080274_16	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0080274_16	Pfam	PF07083	NA	DUF1351
UHGV-0080274_16	Structural annotation	PF07083	NA	NA
UHGV-0080274_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080274_17	UniRef90	UniRef90_A0A1C5QRZ7	ERF superfamily	NA
UHGV-0080274_17	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0080274_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-0080274_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080274_17	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0080274_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080274_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080274_18	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-0080274_18	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0080274_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080274_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080274_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080274_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080274_18	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0080274_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0080274_19	UniRef90	UniRef90_A0A1C5QRV1	ERCC4 domain-containing protein	NA
UHGV-0080274_19	eggNOG-mapper	658655.HMPREF0988_02583	ERCC4 domain	NA
UHGV-0080274_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0080274_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0080274_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080274_20	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0080274_20	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0080274_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0080274_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0080274_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0080274_21	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080274_21	UniRef90	UniRef90_UPI001C030B8A	NA	NA
UHGV-0080274_21	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0080274_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0080274_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080274_21	Structural annotation	PF14297	NA	NA
UHGV-0080274_22	PHROG	phrog_29887	NA	unknown function
UHGV-0080274_22	UniRef90	UniRef90_UPI001379B79E	NA	NA
UHGV-0080274_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080274_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080274_24	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0080274_24	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0080274_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080274_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080274_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080274_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080274_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080274_27	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0080274_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0080274_27	UniRef90	UniRef90_UPI001C01D594	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0080274_27	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0080274_27	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0080274_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0080274_27	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0080274_29	COG	COG4260	Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain	NA
UHGV-0080274_30	PHROG	phrog_6568	NA	unknown function
UHGV-0080274_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080274_33	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0080274_33	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0080274_33	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0080274_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0080274_33	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0080274_34	PHROG	phrog_2412	NA	unknown function
UHGV-0080274_34	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0080274_34	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0080274_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080274_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0080274_35	UniRef90	UniRef90_UPI00156FDA8C	terminase family protein	NA
UHGV-0080274_35	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-0080274_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080274_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080274_35	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080274_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080274_36	UniRef90	UniRef90_UPI00156ECCAD	phage capsid protein	NA
UHGV-0080274_36	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0080274_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080274_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080274_37	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0080274_37	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0080274_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080274_37	Pfam	PF21814	NA	DUF6883
UHGV-0080274_37	COG	COG2369	NA	NA
UHGV-0080274_38	PHROG	phrog_34731	NA	unknown function
UHGV-0080274_38	eggNOG-mapper	1400520.LFAB_08810	NA	NA
UHGV-0080274_38	Structural annotation	PF02699, MF_00369, TIGR00739, COG5475	NA	NA
UHGV-0080274_39	PHROG	phrog_21498	NA	unknown function
UHGV-0080274_39	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0080274_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0080274_39	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0080274_40	PHROG	phrog_918	NA	unknown function
UHGV-0080274_40	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0080274_40	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0080274_40	Pfam	PF19791	NA	DUF6275
UHGV-0080274_40	Structural annotation	PF19791	NA	NA
UHGV-0080274_41	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0080274_41	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0080274_41	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0080274_42	PHROG	phrog_13199	NA	unknown function
UHGV-0080274_42	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0080274_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0080274_43	UniRef90	UniRef90_K1ST28	Phage minor structural protein (Fragment)	NA
UHGV-0080274_43	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0080274_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0080274_43	Structural annotation	PF06810	NA	NA
UHGV-0080274_44	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080274_44	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0080274_44	eggNOG-mapper	679192.HMPREF9013_1301	NA	NA
UHGV-0080274_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080274_45	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0080274_46	PHROG	phrog_3366	NA	unknown function
UHGV-0080274_46	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0080274_46	Pfam	PF20536	NA	DUF6751
UHGV-0080274_46	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0080274_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080274_47	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0080274_47	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0080274_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0080274_48	PHROG	phrog_3266	tail completion	connector
UHGV-0080274_48	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0080274_48	Structural annotation	PF12691	NA	NA
UHGV-0080274_49	PHROG	phrog_3099	NA	unknown function
UHGV-0080274_49	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0080274_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080274_50	PHROG	phrog_706	NA	unknown function
UHGV-0080274_50	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0080274_50	eggNOG-mapper	411468.CLOSCI_02406	COG NOG24969 non supervised orthologous group	NA
UHGV-0080274_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080274_50	Structural annotation	PF06854	NA	NA
UHGV-0080274_51	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0080274_51	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0080274_51	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-0080274_51	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0080274_51	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0080274_51	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0080274_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0080274_51	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0080274_52	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0080274_52	UniRef90	UniRef90_A0A1C5QVY7	Phage-related protein	NA
UHGV-0080274_52	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0080274_52	COG	COG4722	Phage-related protein YomH	NA
UHGV-0080274_52	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0080274_53	PHROG	phrog_3558	tail protein	tail
UHGV-0080274_53	UniRef90	UniRef90_A0A1C5QW63	Phage minor structural protein, N-terminal region	NA
UHGV-0080274_53	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0080274_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0080274_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0080274_53	COG	COG4926	Phage-related protein	NA
UHGV-0080274_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0080274_54	PHROG	phrog_38190	NA	unknown function
UHGV-0080274_54	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0080274_54	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0080274_54	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0080274_55	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0080274_55	COG	COG4675	Phage tail collar domain	NA
UHGV-0080274_57	UniRef90	UniRef90_A0A6N9Q103	Holin (Fragment)	NA
UHGV-0080274_57	eggNOG-mapper	1410670.JHXF01000015_gene2307	Bacteriophage holin family	NA
UHGV-0080274_57	COG	COG4824	Phage-related holin (Lysis protein)	NA