UHGV-0080309

Genome information

vOTU vOTU-019864

Genome length 35,138 bps

CDS count 50

Completeness 88.00% (medium-quality)

geNomad score 0.9656

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080309
vOTU ID	vOTU-019864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_143411
BioSample	SAMEA2737686
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9656
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.82
Jumbo phage	No

Genome content
Genome length	35,138 bps
GC content	35.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.60%
Average CDS length	660.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080309_1	PHROG	phrog_1476	NA	unknown function
UHGV-0080309_1	eggNOG-mapper	1104325.M7W_1348	NA	NA
UHGV-0080309_2	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0080309_2	UniRef90	UniRef90_UPI001898A528	phage terminase small subunit	NA
UHGV-0080309_2	eggNOG-mapper	1104325.M7W_1350	Phage terminase small subunit	NA
UHGV-0080309_2	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0080309_2	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0080309_2	COG	COG5484	NA	NA
UHGV-0080309_2	Structural annotation	PF10668, NF040601, COG5484	NA	NA
UHGV-0080309_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080309_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0080309_3	UniRef90	UniRef90_S4EAE9	Phage terminase, large subunit, PBSX family	NA
UHGV-0080309_3	eggNOG-mapper	1158601.I585_00701	Terminase RNAseH like domain	NA
UHGV-0080309_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080309_3	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0080309_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080309_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080309_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080309_4	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080309_4	UniRef90	UniRef90_UPI00189AB587	phage portal protein	NA
UHGV-0080309_4	eggNOG-mapper	1104325.M7W_1352	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0080309_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080309_4	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0080309_4	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080309_5	eggNOG-mapper	1104325.M7W_1352	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0080309_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080309_6	UniRef90	UniRef90_UPI0018A25E34	capsid protein	NA
UHGV-0080309_6	eggNOG-mapper	1104325.M7W_1353	Phage minor capsid protein 2	NA
UHGV-0080309_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080309_6	COG	COG2369	NA	NA
UHGV-0080309_6	Structural annotation	PF06152	NA	NA
UHGV-0080309_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0080309_7	UniRef90	UniRef90_UPI001560B13D	phage scaffolding protein	NA
UHGV-0080309_7	eggNOG-mapper	1104325.M7W_1354	Phage minor structural protein GP20	NA
UHGV-0080309_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0080309_7	Structural annotation	PF06810	NA	NA
UHGV-0080309_8	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080309_8	UniRef90	UniRef90_UPI001F508B4F	capsid protein	NA
UHGV-0080309_8	eggNOG-mapper	1104325.M7W_1355	NA	NA
UHGV-0080309_8	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080309_9	PHROG	phrog_1378	NA	unknown function
UHGV-0080309_9	eggNOG-mapper	1104325.M7W_1357	NA	NA
UHGV-0080309_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080309_10	UniRef90	UniRef90_A0A0B8QYX3	Coenzyme F420-reducing hydrogenase, beta subunit	NA
UHGV-0080309_10	eggNOG-mapper	1104325.M7W_1358	NA	NA
UHGV-0080309_11	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0080309_11	UniRef90	UniRef90_UPI001897C0B9	putative minor capsid protein	NA
UHGV-0080309_11	eggNOG-mapper	1104325.M7W_1359	Minor capsid protein	NA
UHGV-0080309_11	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0080309_11	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0080309_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080309_12	UniRef90	UniRef90_UPI0015605964	minor capsid protein	NA
UHGV-0080309_12	eggNOG-mapper	1104325.M7W_1360	Minor capsid protein	NA
UHGV-0080309_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0080309_12	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0080309_13	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0080309_13	UniRef90	UniRef90_UPI0018A2E21A	capsid protein	NA
UHGV-0080309_13	eggNOG-mapper	1104325.M7W_1361	Minor capsid protein from bacteriophage	NA
UHGV-0080309_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0080309_13	Structural annotation	PF12691	NA	NA
UHGV-0080309_14	PHROG	phrog_820	major tail protein	tail
UHGV-0080309_14	UniRef90	UniRef90_UPI0019EBA3B5	capsid protein	NA
UHGV-0080309_14	eggNOG-mapper	1104325.M7W_1362	domain, Protein	NA
UHGV-0080309_14	COG	COG5492	NA	NA
UHGV-0080309_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080309_15	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0080309_15	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0080309_15	UniRef90	UniRef90_A0A7Y6QFF5	Ig domain-containing protein	NA
UHGV-0080309_15	eggNOG-mapper	1140001.I571_02116	domain, Protein	NA
UHGV-0080309_15	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0080309_15	COG	COG5492	NA	NA
UHGV-0080309_15	Structural annotation	PF02368, TIGR04225	NA	NA
UHGV-0080309_16	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0080309_16	UniRef90	UniRef90_C9AN01	Predicted protein	NA
UHGV-0080309_16	eggNOG-mapper	1104325.M7W_1363	NA	NA
UHGV-0080309_16	Structural annotation	PF10666	NA	NA
UHGV-0080309_17	PHROG	phrog_706	NA	unknown function
UHGV-0080309_17	UniRef90	UniRef90_C9AN02	Bacteriophage Gp15 protein	NA
UHGV-0080309_17	eggNOG-mapper	1104325.M7W_1364	Bacteriophage Gp15 protein	NA
UHGV-0080309_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080309_17	Structural annotation	PF06854	NA	NA
UHGV-0080309_18	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-0080309_18	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0080309_18	UniRef90	UniRef90_U2QDL4	TMP_3 domain-containing protein	NA
UHGV-0080309_18	eggNOG-mapper	1140001.I571_02119	Transglycosylase SLT domain	NA
UHGV-0080309_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0080309_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0080309_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0080309_18	Structural annotation	PF20155, PF18013, TIGR01760, COG3941, COG3953	NA	NA
UHGV-0080309_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0080309_19	UniRef90	UniRef90_UPI00189A23E5	phage tail family protein	NA
UHGV-0080309_19	eggNOG-mapper	1140001.I571_02120	Phage tail protein	NA
UHGV-0080309_19	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0080309_19	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0080309_19	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0080309_20	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0080309_20	UniRef90	UniRef90_UPI00189A61D2	phage tail protein	NA
UHGV-0080309_20	eggNOG-mapper	1104325.M7W_1367	Prophage endopeptidase tail	NA
UHGV-0080309_20	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0080309_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0080309_20	COG	COG4926	Phage-related protein	NA
UHGV-0080309_20	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0080309_21	PHROG	phrog_4577	tail protein	tail
UHGV-0080309_21	eggNOG-mapper	1104325.M7W_1368	NA	NA
UHGV-0080309_21	Structural annotation	NF041901	NA	NA
UHGV-0080309_22	PHROG	phrog_10054	NA	unknown function
UHGV-0080309_22	UniRef90	UniRef90_A0A179EV50	BppU_N domain-containing protein	NA
UHGV-0080309_22	eggNOG-mapper	1104325.M7W_1369	InterPro IPR018913 Domain of	NA
UHGV-0080309_22	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0080309_22	Structural annotation	PF10651, PF18573, PF01105, NF033147, NF032891	NA	NA
UHGV-0080309_23	PHROG	phrog_1536	NA	unknown function
UHGV-0080309_23	UniRef90	UniRef90_S4DEY7	HsdM_N domain-containing protein	NA
UHGV-0080309_23	eggNOG-mapper	1260356.D920_01753	NA	NA
UHGV-0080309_24	PHROG	phrog_134	NA	unknown function
UHGV-0080309_24	UniRef90	UniRef90_S4DAT4	XkdX family protein	NA
UHGV-0080309_24	eggNOG-mapper	565664.EFXG_01755	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0080309_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0080309_24	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0080309_24	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0080309_25	PHROG	phrog_199	holin	lysis
UHGV-0080309_25	UniRef90	UniRef90_A0A179EV61	Holin	NA
UHGV-0080309_25	eggNOG-mapper	1486428.A0A097BY69_9CAUD	Pfam:Phage_holin_4_1	NA
UHGV-0080309_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0080309_25	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0080309_26	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080309_26	PHROG	phrog_3393	endolysin	lysis
UHGV-0080309_26	UniRef90	UniRef90_A0A179EW14	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080309_26	eggNOG-mapper	857312.D9J0J9_9CAUD	Bacterial SH3 domain	NA
UHGV-0080309_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0080309_26	Structural annotation	PF01510, PF01835, NF007507, COG5632	NA	NA
UHGV-0080309_30	UniRef90	UniRef90_UPI000A32CB2C	response regulator transcription factor	NA
UHGV-0080309_31	PHROG	phrog_2277	NA	unknown function
UHGV-0080309_31	eggNOG-mapper	169963.lmo2272	NA	NA
UHGV-0080309_32	KOfam	K14059	int; integrase	NA
UHGV-0080309_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0080309_32	UniRef90	UniRef90_A0A133CEM3	Site-specific integrase	NA
UHGV-0080309_32	eggNOG-mapper	1140001.I571_02070	Phage integrase family	NA
UHGV-0080309_32	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0080309_32	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0080309_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080309_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080309_32	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0080309_33	PHROG	phrog_888	NA	unknown function
UHGV-0080309_33	UniRef90	UniRef90_UPI001E509A4B	SHOCT domain-containing protein	NA
UHGV-0080309_33	eggNOG-mapper	1423775.BAMN01000009_gene436	Short C-terminal domain	NA
UHGV-0080309_33	Pfam	PF14472	NA	DUF4429
UHGV-0080309_33	Structural annotation	PF08000, COG3402	NA	NA
UHGV-0080309_34	PHROG	phrog_87	metallo-protease	other
UHGV-0080309_34	UniRef90	UniRef90_A0A179ER41	Toxin	NA
UHGV-0080309_34	eggNOG-mapper	768486.EHR_09785	IrrE N-terminal-like domain	NA
UHGV-0080309_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080309_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080309_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080309_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080309_35	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0080309_35	UniRef90	UniRef90_A0A7Y6USF6	Helix-turn-helix transcriptional regulator	NA
UHGV-0080309_35	eggNOG-mapper	1104325.M7W_1328	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080309_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080309_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080309_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080309_35	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0080309_36	PHROG	phrog_3642	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080309_36	UniRef90	UniRef90_A0A7U8FNQ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0080309_36	eggNOG-mapper	1104325.M7W_1329	NA	NA
UHGV-0080309_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080309_37	PHROG	phrog_1970	NA	unknown function
UHGV-0080309_37	UniRef90	UniRef90_C9AMX1	Predicted protein	NA
UHGV-0080309_37	eggNOG-mapper	1139219.I569_00211	NA	NA
UHGV-0080309_38	PHROG	phrog_1124	transcriptional regulator	transcription regulation
UHGV-0080309_38	UniRef90	UniRef90_A0A7H4KXZ9	HTH cro/C1-type domain-containing protein	NA
UHGV-0080309_38	eggNOG-mapper	1104325.M7W_1331	NA	NA
UHGV-0080309_38	Structural annotation	PF01381, TIGR02607, COG1476	NA	NA
UHGV-0080309_39	UniRef90	UniRef90_A0A8F4AFY2	Helix-turn-helix domain-containing protein	NA
UHGV-0080309_39	eggNOG-mapper	1104325.M7W_1332	NA	NA
UHGV-0080309_39	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0080309_40	PHROG	phrog_35588	NA	unknown function
UHGV-0080309_40	eggNOG-mapper	1260356.D920_02049	NA	NA
UHGV-0080309_41	PHROG	phrog_4690	NA	unknown function
UHGV-0080309_41	eggNOG-mapper	1158604.I591_00505	NA	NA
UHGV-0080309_42	PHROG	phrog_31313	NA	unknown function
UHGV-0080309_42	UniRef90	UniRef90_C9A174	Predicted protein	NA
UHGV-0080309_42	eggNOG-mapper	1300150.EMQU_0764	NA	NA
UHGV-0080309_42	Structural annotation	PF09466	NA	NA
UHGV-0080309_43	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080309_43	UniRef90	UniRef90_UPI000825B625	ERF family protein	NA
UHGV-0080309_43	eggNOG-mapper	1462527.CCDM010000010_gene489	ERF superfamily	NA
UHGV-0080309_43	Pfam	PF04404	ERF superfamily	ERF
UHGV-0080309_43	Structural annotation	PF04404, TIGR00607, COG5468	NA	NA
UHGV-0080309_44	PHROG	phrog_674	NA	unknown function
UHGV-0080309_44	UniRef90	UniRef90_A0A7G7IMP4	NA	NA
UHGV-0080309_44	eggNOG-mapper	1300150.EMQU_2518	NA	NA
UHGV-0080309_44	Pfam	PF07083	NA	DUF1351
UHGV-0080309_44	Structural annotation	PF07083	NA	NA
UHGV-0080309_45	PHROG	phrog_398	NA	unknown function
UHGV-0080309_45	UniRef90	UniRef90_UPI000DE8B71A	putative HNHc nuclease	NA
UHGV-0080309_45	eggNOG-mapper	1201292.DR75_1532	Putative HNHc nuclease	NA
UHGV-0080309_45	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0080309_45	Structural annotation	PF16784	NA	NA
UHGV-0080309_46	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080309_46	UniRef90	UniRef90_UPI001CCA757C	NA	NA
UHGV-0080309_46	eggNOG-mapper	1158601.I585_00720	NA	NA
UHGV-0080309_46	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0080309_46	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080309_46	Structural annotation	PF14297	NA	NA
UHGV-0080309_48	PHROG	phrog_27571	NA	unknown function
UHGV-0080309_48	eggNOG-mapper	1158614.I592_03396	NA	NA
UHGV-0080309_50	PHROG	phrog_19610	NA	unknown function