UHGV-0080331

Genome information

Genome length 30,200 bps

CDS count 32

Completeness 79.35% (medium-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080331
vOTU ID	vOTU-027537
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151620
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-2.83
Jumbo phage	No

Genome content
Genome length	30,200 bps
GC content	59.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	89.71%
Average CDS length	849.75 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080331_1	KOfam	K10117	msmE; raffinose/stachyose/melibiose transport system substrate-binding protein	NA
UHGV-0080331_1	eggNOG-mapper	748224.HMPREF9436_01373	Bacterial extracellular solute-binding protein	NA
UHGV-0080331_1	COG	COG0737	2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family	NA
UHGV-0080331_2	eggNOG-mapper	748224.HMPREF9436_00835	helix_turn_helix multiple antibiotic resistance protein	NA
UHGV-0080331_2	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0080331_3	KOfam	K18889	mdlA, smdA; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0080331_3	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0080331_3	UniRef90	UniRef90_A0A174DHM2	Probable multidrug resistance ABC transporter ATP-binding/permease protein YheI	NA
UHGV-0080331_3	eggNOG-mapper	748224.HMPREF9436_00836	ABC transporter transmembrane region	NA
UHGV-0080331_3	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0080331_3	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0080331_3	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0080331_3	Structural annotation	PF00664, PF00005, MF_01005, TIGR02204, COG1132	NA	NA
UHGV-0080331_4	KOfam	K18890	mdlB, smdB; ATP-binding cassette, subfamily B, multidrug efflux pump	NA
UHGV-0080331_4	PHROG	phrog_2392	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0080331_4	UniRef90	UniRef90_A0A174DI92	Probable multidrug resistance ABC transporter ATP-binding/permease protein YheH	NA
UHGV-0080331_4	eggNOG-mapper	748224.HMPREF9436_00837	ABC transporter transmembrane region	NA
UHGV-0080331_4	Pfam	PF00664	ABC transporter transmembrane region	ABC_membrane
UHGV-0080331_4	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0080331_4	COG	COG1132	ABC-type multidrug transport system, ATPase and permease component	NA
UHGV-0080331_5	KOfam	K14059	int; integrase	NA
UHGV-0080331_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0080331_5	UniRef90	UniRef90_A0A174D176	Tyrosine recombinase XerD	NA
UHGV-0080331_5	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0080331_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080331_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080331_5	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0080331_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080331_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080331_7	UniRef90	UniRef90_A0A174D4Z0	Transcriptional repressor DicA	NA
UHGV-0080331_7	eggNOG-mapper	768486.EHR_02790	Peptidase S24-like	NA
UHGV-0080331_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080331_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080331_7	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0080331_8	UniRef90	UniRef90_R6PDN4	Conserved domain protein	NA
UHGV-0080331_8	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0080331_8	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0080331_14	PHROG	phrog_1733	NA	unknown function
UHGV-0080331_14	eggNOG-mapper	1140002.I570_01471	NA	NA
UHGV-0080331_14	Structural annotation	PF03677	NA	NA
UHGV-0080331_15	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0080331_16	Structural annotation	PF10735	NA	NA
UHGV-0080331_17	PHROG	phrog_24484	NA	unknown function
UHGV-0080331_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080331_19	eggNOG-mapper	525255.HMPREF0077_0972	NA	NA
UHGV-0080331_19	Structural annotation	PF20199	NA	NA
UHGV-0080331_20	UniRef90	UniRef90_A0A844DP33	SqdX protein	NA
UHGV-0080331_20	Structural annotation	PF06530, MF_00674, TIGR01637, COG1342	NA	NA
UHGV-0080331_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080331_22	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0080331_22	UniRef90	UniRef90_A0A174CZ87	Terminase-like family	NA
UHGV-0080331_22	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0080331_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080331_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080331_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080331_23	PHROG	phrog_156	portal protein	head and packaging
UHGV-0080331_23	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0080331_23	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0080331_23	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0080331_24	KOfam	K07584	NA	NA
UHGV-0080331_24	PHROG	phrog_13908	NA	unknown function
UHGV-0080331_24	UniRef90	UniRef90_A0A174CZ20	Predicted ribosomal protein	NA
UHGV-0080331_24	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-0080331_24	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0080331_24	COG	COG2868	NA	NA
UHGV-0080331_24	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0080331_25	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0080331_25	UniRef90	UniRef90_A0A844DTU7	N4-gp56 family major capsid protein	NA
UHGV-0080331_25	eggNOG-mapper	718252.FP2_29220	NA	NA
UHGV-0080331_25	Pfam	PF13252	NA	DUF4043
UHGV-0080331_25	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0080331_25	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080331_26	PHROG	phrog_15239	NA	unknown function
UHGV-0080331_27	PHROG	phrog_12105	NA	unknown function
UHGV-0080331_27	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0080331_28	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0080331_28	eggNOG-mapper	748224.HMPREF9436_02542	NA	NA
UHGV-0080331_28	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0080331_29	UniRef90	UniRef90_A0A329TFM2	Rho-GAP domain-containing protein	NA
UHGV-0080331_30	eggNOG-mapper	748224.HMPREF9436_01404	lysozyme activity	NA
UHGV-0080331_30	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0080331_31	eggNOG-mapper	748224.HMPREF9436_01405	lysozyme activity	NA
UHGV-0080331_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0080331_31	Structural annotation	MF_02066	NA	NA
UHGV-0080331_32	eggNOG-mapper	748224.HMPREF9436_01406	NA	NA