UHGV-0080389

Genome information

Genome length 26,491 bps

CDS count 42

Completeness 76.64% (medium-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080389
vOTU ID	vOTU-042319
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152968
BioSample	SAMEA2784454
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.17
Jumbo phage	No

Genome content
Genome length	26,491 bps
GC content	42.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.22%
Average CDS length	596.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080389_1	UniRef90	UniRef90_UPI001C00BADA	helix-turn-helix domain-containing protein	NA
UHGV-0080389_1	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0080389_1	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0080389_1	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0080389_2	PHROG	phrog_87	metallo-protease	other
UHGV-0080389_2	UniRef90	UniRef90_A0A350VV99	Peptidase_M78 domain-containing protein	NA
UHGV-0080389_2	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0080389_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080389_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080389_2	Structural annotation	PF06114	NA	NA
UHGV-0080389_3	PHROG	phrog_16228	NA	unknown function
UHGV-0080389_3	UniRef90	UniRef90_A0A1E3UEB9	Uma2 domain-containing protein	NA
UHGV-0080389_3	eggNOG-mapper	1235802.C823_03088	Putative restriction endonuclease	NA
UHGV-0080389_3	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0080389_3	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0080389_3	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0080389_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0080389_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080389_4	UniRef90	UniRef90_A0A417WEP2	Helix-turn-helix domain-containing protein	NA
UHGV-0080389_4	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0080389_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0080389_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080389_4	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0080389_11	Pfam	PF20323	NA	DUF6618
UHGV-0080389_11	Structural annotation	PF20323	NA	NA
UHGV-0080389_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080389_12	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0080389_12	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0080389_12	Structural annotation	PF21578	NA	NA
UHGV-0080389_13	PHROG	phrog_824	NA	unknown function
UHGV-0080389_13	UniRef90	UniRef90_A0A2N0K9N3	Nuclease	NA
UHGV-0080389_13	eggNOG-mapper	742741.HMPREF9475_00407	VRR_NUC	NA
UHGV-0080389_13	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0080389_15	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0080389_15	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0080389_15	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0080389_15	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0080389_15	Pfam	PF13614	AAA domain	AAA_31
UHGV-0080389_15	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0080389_15	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0080389_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0080389_16	PHROG	phrog_15982	NA	unknown function
UHGV-0080389_16	UniRef90	UniRef90_A0A494WRE3	Nucleoid occlusion protein	NA
UHGV-0080389_16	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0080389_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0080389_16	Pfam	PF12961	NA	DUF3850
UHGV-0080389_16	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0080389_16	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0080389_17	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0080389_17	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0080389_17	UniRef90	UniRef90_UPI00190C2E98	ribonuclease HI	NA
UHGV-0080389_17	eggNOG-mapper	1293054.HSACCH_01448	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0080389_17	Pfam	PF00075	RNase H	RNase_H
UHGV-0080389_17	COG	COG0328	Ribonuclease HI	NA
UHGV-0080389_17	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0080389_18	PHROG	phrog_17690	NA	unknown function
UHGV-0080389_18	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0080389_19	Structural annotation	PF18024, TIGR04381	NA	NA
UHGV-0080389_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080389_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080389_20	UniRef90	UniRef90_R7BHP7	Single-stranded DNA-binding protein	NA
UHGV-0080389_20	eggNOG-mapper	511680.BUTYVIB_00906	Single-strand binding protein family	NA
UHGV-0080389_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080389_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080389_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080389_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080389_20	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080389_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080389_21	UniRef90	UniRef90_UPI001C3C1569	NA	NA
UHGV-0080389_21	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0080389_21	Pfam	PF07374	NA	DUF1492
UHGV-0080389_22	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080389_22	UniRef90	UniRef90_A0A356C4J5	HNH endonuclease	NA
UHGV-0080389_22	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0080389_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0080389_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080389_22	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0080389_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-0080389_23	UniRef90	UniRef90_UPI001A9C29A4	phage portal protein	NA
UHGV-0080389_23	eggNOG-mapper	1280698.AUJS01000007_gene1033	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0080389_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080389_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0080389_24	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0080389_24	UniRef90	UniRef90_UPI001F3BD4CE	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0080389_24	eggNOG-mapper	875454.BAEW01000017_gene1600	NA	NA
UHGV-0080389_25	PHROG	phrog_37230	NA	unknown function
UHGV-0080389_26	PHROG	phrog_3675	NA	unknown function
UHGV-0080389_26	UniRef90	UniRef90_UPI001C385ABB	YjcQ family protein	NA
UHGV-0080389_26	eggNOG-mapper	713605.ADHG01000003_gene720	YjcQ protein	NA
UHGV-0080389_26	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0080389_26	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0080389_27	PHROG	phrog_17688	NA	unknown function
UHGV-0080389_27	UniRef90	UniRef90_UPI001F2435FC	terminase large subunit	NA
UHGV-0080389_27	eggNOG-mapper	1280698.AUJS01000007_gene1036	phage terminase, large subunit	NA
UHGV-0080389_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0080389_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0080389_28	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0080389_28	UniRef90	UniRef90_A0A890GYE3	NA	NA
UHGV-0080389_28	eggNOG-mapper	706433.HMPREF9430_01266	NA	NA
UHGV-0080389_28	Pfam	PF14265	NA	DUF4355
UHGV-0080389_28	Structural annotation	PF14265	NA	NA
UHGV-0080389_29	PHROG	phrog_32396	NA	unknown function
UHGV-0080389_29	UniRef90	UniRef90_A0A3E3DUT9	Phage major capsid protein	NA
UHGV-0080389_29	eggNOG-mapper	1280698.AUJS01000007_gene1038	Phage capsid family	NA
UHGV-0080389_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080389_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080389_31	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0080389_31	UniRef90	UniRef90_A0A3R9KT03	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0080389_31	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0080389_31	Pfam	PF09355	NA	Phage_Gp19
UHGV-0080389_31	Structural annotation	PF09355	NA	NA
UHGV-0080389_32	PHROG	phrog_501	head closure Hc1	connector
UHGV-0080389_32	UniRef90	UniRef90_A0A0E3WFP3	NA	NA
UHGV-0080389_32	eggNOG-mapper	1231377.C426_1734	NA	NA
UHGV-0080389_32	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0080389_33	PHROG	phrog_387	neck protein	connector
UHGV-0080389_34	PHROG	phrog_123	tail terminator	connector
UHGV-0080389_34	UniRef90	UniRef90_A0A2A5RIK6	NA	NA
UHGV-0080389_34	eggNOG-mapper	1321820.HMPREF1983_00928	NA	NA
UHGV-0080389_34	Structural annotation	PF06141	NA	NA
UHGV-0080389_35	PHROG	phrog_117	major tail protein	tail
UHGV-0080389_35	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-0080389_35	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0080389_35	COG	COG5492	NA	NA
UHGV-0080389_35	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0080389_36	PHROG	phrog_1526	NA	unknown function
UHGV-0080389_36	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-0080389_36	eggNOG-mapper	1121864.OMO_02159	NA	NA
UHGV-0080389_37	PHROG	phrog_1633	NA	unknown function
UHGV-0080389_37	UniRef90	UniRef90_A0A7C7ERU0	NA	NA
UHGV-0080389_37	eggNOG-mapper	908337.HMPREF9257_0530	NA	NA
UHGV-0080389_37	Pfam	PF17318	NA	DUF5361
UHGV-0080389_37	Structural annotation	PF17318	NA	NA
UHGV-0080389_38	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0080389_38	UniRef90	UniRef90_A0A1C5Y9X6	Phage-related protein	NA
UHGV-0080389_38	eggNOG-mapper	665950.HMPREF1025_02522	Phage tail tape measure protein, TP901 family	NA
UHGV-0080389_38	COG	COG1511	NA	NA
UHGV-0080389_39	Pfam	PF20458	NA	DUF6711
UHGV-0080389_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0080389_40	PHROG	phrog_18190	NA	unknown function
UHGV-0080389_40	eggNOG-mapper	1449050.JNLE01000003_gene3879	NA	NA