UHGV-0080535

Genome information

Genome length 29,785 bps

CDS count 42

Completeness 72.39% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080535
vOTU ID	vOTU-036230
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_165113
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.29
Jumbo phage	No

Genome content
Genome length	29,785 bps
GC content	41.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.63%
Average CDS length	674.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080535_1	PHROG	phrog_6616	tail protein	tail
UHGV-0080535_1	UniRef90	UniRef90_A0A414EG21	Tail fiber domain-containing protein	NA
UHGV-0080535_1	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0080535_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0080535_2	PHROG	phrog_1194	NA	unknown function
UHGV-0080535_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0080535_3	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0080535_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080535_3	UniRef90	UniRef90_A0A174LLY7	Phage-related protein	NA
UHGV-0080535_3	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0080535_3	COG	COG5412	Phage-related protein	NA
UHGV-0080535_4	PHROG	phrog_706	NA	unknown function
UHGV-0080535_4	UniRef90	UniRef90_UPI00189FC907	Gp15 family bacteriophage protein	NA
UHGV-0080535_4	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0080535_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080535_4	Structural annotation	PF06854	NA	NA
UHGV-0080535_5	PHROG	phrog_11299	NA	unknown function
UHGV-0080535_5	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0080535_5	Structural annotation	PF10666	NA	NA
UHGV-0080535_6	PHROG	phrog_3099	NA	unknown function
UHGV-0080535_6	eggNOG-mapper	476272.RUMHYD_01782	NA	NA
UHGV-0080535_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080535_7	PHROG	phrog_3266	tail completion	connector
UHGV-0080535_7	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0080535_7	Structural annotation	PF12691	NA	NA
UHGV-0080535_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080535_8	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0080535_8	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0080535_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0080535_8	Structural annotation	PF11114	NA	NA
UHGV-0080535_9	PHROG	phrog_3366	NA	unknown function
UHGV-0080535_9	Pfam	PF20536	NA	DUF6751
UHGV-0080535_9	Structural annotation	PF20536	NA	NA
UHGV-0080535_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080535_10	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0080535_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080535_11	UniRef90	UniRef90_UPI00157128C8	phage major capsid protein	NA
UHGV-0080535_11	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0080535_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080535_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080535_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080535_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080535_12	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0080535_12	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0080535_12	AcrCatalog	cluster_74817	NA	NA
UHGV-0080535_12	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0080535_13	KOfam	K07584	NA	NA
UHGV-0080535_13	PHROG	phrog_4478	peptidase	other
UHGV-0080535_13	UniRef90	UniRef90_UPI00156D7F8B	ribosomal-processing cysteine protease Prp	NA
UHGV-0080535_13	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0080535_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0080535_13	COG	COG2868	NA	NA
UHGV-0080535_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0080535_14	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0080535_14	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0080535_14	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0080535_14	Structural annotation	PF14359	NA	NA
UHGV-0080535_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080535_16	UniRef90	UniRef90_UPI000930F4BD	phage minor capsid protein	NA
UHGV-0080535_16	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0080535_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080535_16	COG	COG2369	NA	NA
UHGV-0080535_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0080535_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080535_17	UniRef90	UniRef90_UPI001897501E	phage portal protein	NA
UHGV-0080535_17	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0080535_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080535_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080535_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080535_18	PHROG	phrog_10250	NA	unknown function
UHGV-0080535_18	UniRef90	UniRef90_UPI0018985A97	PBSX family phage terminase large subunit	NA
UHGV-0080535_18	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0080535_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080535_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0080535_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080535_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080535_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080535_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0080535_19	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0080535_19	UniRef90	UniRef90_A0A416BKP7	Phage portal protein	NA
UHGV-0080535_19	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0080535_19	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0080535_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0080535_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0080535_19	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0080535_20	Structural annotation	PF15968	NA	NA
UHGV-0080535_21	eggNOG-mapper	1009370.ALO_15872	NA	NA
UHGV-0080535_21	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-0080535_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080535_22	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0080535_22	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0080535_22	Structural annotation	PF04545	NA	NA
UHGV-0080535_23	PHROG	phrog_19011	NA	unknown function
UHGV-0080535_23	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0080535_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0080535_26	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0080535_26	UniRef90	UniRef90_UPI000E43289D	DNA cytosine methyltransferase	NA
UHGV-0080535_26	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0080535_26	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0080535_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0080535_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080535_26	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0080535_29	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080535_29	UniRef90	UniRef90_A0A415L5F5	NA	NA
UHGV-0080535_29	eggNOG-mapper	411461.DORFOR_00014	NA	NA
UHGV-0080535_29	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0080535_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080535_29	Structural annotation	PF14297	NA	NA
UHGV-0080535_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0080535_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080535_30	UniRef90	UniRef90_A0A415L586	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0080535_30	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0080535_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0080535_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0080535_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0080535_31	PHROG	phrog_1029	NA	unknown function
UHGV-0080535_31	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0080535_31	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0080535_32	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0080535_32	UniRef90	UniRef90_A0A1P8Q4A1	Replication terminator protein	NA
UHGV-0080535_32	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0080535_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0080535_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080535_33	UniRef90	UniRef90_A0A415L5D0	Recombinase RecT	NA
UHGV-0080535_33	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0080535_33	Pfam	PF03837	RecT family	RecT
UHGV-0080535_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0080535_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0080535_33	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0080535_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080535_34	UniRef90	UniRef90_A0A415L5E5	Endonuclease	NA
UHGV-0080535_34	eggNOG-mapper	97139.C824_05807	YqaJ-like viral recombinase domain	NA
UHGV-0080535_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0080535_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0080535_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0080535_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0080535_38	PHROG	phrog_6058	NA	unknown function
UHGV-0080535_38	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0080535_38	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0080535_40	Structural annotation	PF02185	NA	NA
UHGV-0080535_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080535_41	UniRef90	UniRef90_A5ZPP3	DNA-binding helix-turn-helix protein	NA
UHGV-0080535_41	eggNOG-mapper	411459.RUMOBE_00960	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0080535_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080535_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0080535_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080535_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080535_42	UniRef90	UniRef90_A5ZPP4	DNA-binding helix-turn-helix protein	NA
UHGV-0080535_42	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0080535_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080535_42	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0080535_42	Structural annotation	PF12844, NF041951, COG1396	NA	NA