UHGV-0080599

Genome information

Genome length 38,995 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9545

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080599
vOTU ID	vOTU-014731
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157060
BioSample	SAMEA2784482
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9545
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.4
Jumbo phage	No

Genome content
Genome length	38,995 bps
GC content	27.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.84%
Average CDS length	544.82 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080599_1	UniRef90	UniRef90_R6TSQ2	NA	NA
UHGV-0080599_2	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0080599_2	PHROG	phrog_7573	NA	unknown function
UHGV-0080599_2	UniRef90	UniRef90_A0A1Q6LY03	Rubrerythrin family protein	NA
UHGV-0080599_2	eggNOG-mapper	469596.HMPREF9488_02704	Manganese containing catalase	NA
UHGV-0080599_2	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0080599_2	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0080599_3	PHROG	phrog_7566	NA	unknown function
UHGV-0080599_3	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA
UHGV-0080599_3	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0080599_5	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0080599_5	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0080599_5	UniRef90	UniRef90_UPI0015FE268E	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0080599_5	eggNOG-mapper	1141106.CAIB01000151_gene1319	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0080599_5	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0080599_5	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0080599_6	PHROG	phrog_9066	endolysin	lysis
UHGV-0080599_6	UniRef90	UniRef90_R5TJG1	SH3 domain protein	NA
UHGV-0080599_6	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0080599_6	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0080599_6	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0080599_7	PHROG	phrog_608	holin	lysis
UHGV-0080599_7	UniRef90	UniRef90_UPI001BAA7404	phage holin, LLH family	NA
UHGV-0080599_7	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0080599_7	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0080599_14	PHROG	phrog_6616	tail protein	tail
UHGV-0080599_15	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0080599_16	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0080599_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080599_16	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0080599_16	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0080599_16	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0080599_17	PHROG	phrog_706	NA	unknown function
UHGV-0080599_17	UniRef90	UniRef90_A0A1V6D632	Bacteriophage Gp15 protein	NA
UHGV-0080599_17	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-0080599_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080599_17	Structural annotation	PF06854	NA	NA
UHGV-0080599_18	Structural annotation	PF10666	NA	NA
UHGV-0080599_19	PHROG	phrog_3099	NA	unknown function
UHGV-0080599_19	eggNOG-mapper	1449050.JNLE01000003_gene3884	NA	NA
UHGV-0080599_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080599_20	PHROG	phrog_3266	tail completion	connector
UHGV-0080599_20	UniRef90	UniRef90_A0A846K5J6	Chloramphenicol resistance protein	NA
UHGV-0080599_20	eggNOG-mapper	536233.CLO_0890	NA	NA
UHGV-0080599_20	Structural annotation	PF12691	NA	NA
UHGV-0080599_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080599_21	UniRef90	UniRef90_UPI001F06267A	minor capsid protein	NA
UHGV-0080599_21	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0080599_21	Structural annotation	PF11114	NA	NA
UHGV-0080599_22	PHROG	phrog_3366	NA	unknown function
UHGV-0080599_22	Structural annotation	PF20536	NA	NA
UHGV-0080599_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080599_23	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0080599_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080599_25	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0080599_25	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-0080599_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0080599_26	UniRef90	UniRef90_UPI00117868A2	phage scaffolding protein	NA
UHGV-0080599_26	eggNOG-mapper	642492.Clole_0820	PFAM Phage minor structural	NA
UHGV-0080599_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0080599_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080599_28	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0080599_28	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0080599_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080599_28	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0080599_28	COG	COG2369	NA	NA
UHGV-0080599_28	Structural annotation	PF03496, PF04233, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0080599_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080599_29	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0080599_29	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0080599_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080599_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080599_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080599_30	PHROG	phrog_10250	NA	unknown function
UHGV-0080599_30	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-0080599_30	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0080599_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080599_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080599_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080599_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080599_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0080599_31	UniRef90	UniRef90_A0A7X5CDW9	Helix-turn-helix domain-containing protein	NA
UHGV-0080599_31	eggNOG-mapper	742733.HMPREF9469_01828	transposase activity	NA
UHGV-0080599_31	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0080599_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0080599_31	Structural annotation	PF07141	NA	NA
UHGV-0080599_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080599_34	UniRef90	UniRef90_A0A843JAF3	NA	NA
UHGV-0080599_34	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-0080599_34	Pfam	PF06356	NA	DUF1064
UHGV-0080599_34	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0080599_35	Structural annotation	MF_00859, COG4451	NA	NA
UHGV-0080599_36	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0080599_36	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0080599_40	PHROG	phrog_1818	NA	unknown function
UHGV-0080599_40	UniRef90	UniRef90_UPI0011E5A4ED	HAD domain-containing protein	NA
UHGV-0080599_40	eggNOG-mapper	1541960.KQ78_01770	NA	NA
UHGV-0080599_40	Pfam	PF18143	HAD domain in Swiss Army Knife RNA repair proteins	HAD_SAK_2
UHGV-0080599_40	Structural annotation	PF18143, TIGR01261	NA	NA
UHGV-0080599_46	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080599_46	UniRef90	UniRef90_A0A386PKY6	HNH endonuclease	NA
UHGV-0080599_46	eggNOG-mapper	696281.Desru_1079	HNH endonuclease	NA
UHGV-0080599_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0080599_46	Structural annotation	PF13392	NA	NA
UHGV-0080599_47	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0080599_47	eggNOG-mapper	796940.HMPREF9628_00162	NA	NA
UHGV-0080599_47	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0080599_51	PHROG	phrog_25509	NA	unknown function
UHGV-0080599_52	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0080599_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0080599_52	UniRef90	UniRef90_A0A1V5WK38	Putative metallo-hydrolase YycJ	NA
UHGV-0080599_52	eggNOG-mapper	1118057.CAGX01000058_gene97	Beta-lactamase superfamily domain	NA
UHGV-0080599_52	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0080599_52	dbAPIS	APIS062	NA	NA
UHGV-0080599_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0080599_52	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0080599_53	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0080599_53	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080599_53	UniRef90	UniRef90_UPI0019569AC1	recombinase RecT	NA
UHGV-0080599_53	eggNOG-mapper	1382358.JHVN01000024_gene1692	RecT protein	NA
UHGV-0080599_53	Pfam	PF03837	RecT family	RecT
UHGV-0080599_53	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0080599_53	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0080599_54	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0080599_54	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080599_54	UniRef90	UniRef90_UPI0006F10C76	AAA family ATPase	NA
UHGV-0080599_54	eggNOG-mapper	1391647.AVSV01000022_gene2522	nuclear chromosome segregation	NA
UHGV-0080599_54	Pfam	PF02463	RecF/RecN/SMC N terminal domain	SMC_N
UHGV-0080599_54	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0080599_54	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0080599_56	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0080599_56	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0080599_56	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0080599_56	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0080599_56	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0080599_56	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0080599_56	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080599_56	Structural annotation	PF10771, MF_01177, TIGR01714, COG3935	NA	NA
UHGV-0080599_61	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080599_61	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0080599_61	UniRef90	UniRef90_UPI00083206A4	helix-turn-helix transcriptional regulator	NA
UHGV-0080599_61	eggNOG-mapper	438780.D2KRD7_9CAUD	sequence-specific DNA binding	NA
UHGV-0080599_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080599_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0080599_62	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0080599_62	UniRef90	UniRef90_UPI001D15B6CB	helix-turn-helix domain-containing protein	NA
UHGV-0080599_62	eggNOG-mapper	320840.Q4ZCB4_9CAUD	sequence-specific DNA binding	NA
UHGV-0080599_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080599_62	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0080599_63	PHROG	phrog_888	NA	unknown function
UHGV-0080599_63	UniRef90	UniRef90_A0A7X8WLI3	SHOCT domain-containing protein	NA
UHGV-0080599_63	eggNOG-mapper	1151292.QEW_2074	Short C-terminal domain	NA
UHGV-0080599_64	UniRef90	UniRef90_A0A3B8SNC0	Peptidase_M78 domain-containing protein	NA
UHGV-0080599_64	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080599_64	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080599_66	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080599_66	PHROG	phrog_95	integrase	integration and excision
UHGV-0080599_66	UniRef90	UniRef90_UPI001C108C11	recombinase family protein	NA
UHGV-0080599_66	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0080599_66	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080599_66	Pfam	PF07508	Recombinase	Recombinase
UHGV-0080599_66	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0080599_66	Structural annotation	PF07508, PF00239, PF05384, NF041201, COG1961	NA	NA