UHGV-0080603

Genome information

Genome length 39,477 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080603
vOTU ID	vOTU-010193
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157061
BioSample	SAMEA2784482
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.63
Jumbo phage	No

Genome content
Genome length	39,477 bps
GC content	37.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.99%
Average CDS length	653.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080603_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0080603_1	eggNOG-mapper	515620.EUBELI_00515	NA	NA
UHGV-0080603_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0080603_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080603_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0080603_3	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0080603_3	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0080603_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080603_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0080603_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0080603_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0080603_3	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0080603_4	eggNOG-mapper	525254.HMPREF0072_1328	Swim zinc finger domain protein	NA
UHGV-0080603_4	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0080603_5	PHROG	phrog_2546	NA	unknown function
UHGV-0080603_5	UniRef90	UniRef90_UPI0019563C69	PH domain-containing protein	NA
UHGV-0080603_5	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0080603_5	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0080603_6	PHROG	phrog_87	metallo-protease	other
UHGV-0080603_6	UniRef90	UniRef90_A0A3R6AQ03	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0080603_6	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0080603_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080603_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080603_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080603_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080603_7	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0080603_7	UniRef90	UniRef90_A0A133KCZ3	DNA-binding helix-turn-helix protein	NA
UHGV-0080603_7	eggNOG-mapper	1211819.CALK01000005_gene2436	Peptidase S24-like	NA
UHGV-0080603_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080603_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0080603_7	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0080603_8	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0080603_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080603_8	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-0080603_8	eggNOG-mapper	1035189.HMPREF9954_1968	sequence-specific DNA binding	NA
UHGV-0080603_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080603_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080603_8	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080603_9	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0080603_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0080603_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0080603_14	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0080603_14	Structural annotation	PF21578	NA	NA
UHGV-0080603_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0080603_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0080603_15	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0080603_15	eggNOG-mapper	1121447.JONL01000002_gene2134	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0080603_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0080603_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0080603_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0080603_16	Structural annotation	PF19962, NF011863	NA	NA
UHGV-0080603_17	PHROG	phrog_7566	NA	unknown function
UHGV-0080603_17	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0080603_19	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0080603_20	PHROG	phrog_8470	NA	unknown function
UHGV-0080603_20	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0080603_20	eggNOG-mapper	483218.BACPEC_01166	PcfJ-like protein	NA
UHGV-0080603_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0080603_20	Structural annotation	PF14284	NA	NA
UHGV-0080603_21	PHROG	phrog_15077	NA	unknown function
UHGV-0080603_21	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0080603_21	eggNOG-mapper	483218.BACPEC_01165	NA	NA
UHGV-0080603_21	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0080603_25	PHROG	phrog_20593	NA	unknown function
UHGV-0080603_26	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0080603_27	PHROG	phrog_625	NA	unknown function
UHGV-0080603_27	UniRef90	UniRef90_A0A413YU40	ASCH domain-containing protein	NA
UHGV-0080603_27	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0080603_27	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0080603_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080603_28	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0080603_28	Structural annotation	PF02996	NA	NA
UHGV-0080603_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0080603_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0080603_29	UniRef90	UniRef90_A0A413YU49	Terminase small subunit	NA
UHGV-0080603_29	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0080603_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0080603_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0080603_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0080603_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080603_30	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0080603_30	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0080603_30	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0080603_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0080603_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080603_30	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080603_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080603_31	UniRef90	UniRef90_A0A413YU90	Phage portal protein	NA
UHGV-0080603_31	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0080603_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080603_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080603_32	UniRef90	UniRef90_A0A413YU28	Minor capsid protein	NA
UHGV-0080603_32	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0080603_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080603_32	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0080603_32	Structural annotation	PF06152	NA	NA
UHGV-0080603_34	PHROG	phrog_872	NA	unknown function
UHGV-0080603_34	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0080603_34	eggNOG-mapper	1123034.JMKP01000004_gene1746	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0080603_34	Pfam	PF11195	NA	DUF2829
UHGV-0080603_34	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0080603_34	Structural annotation	PF11195	NA	NA
UHGV-0080603_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0080603_35	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0080603_36	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080603_36	UniRef90	UniRef90_A0A3D5M0U8	Phage capsid protein	NA
UHGV-0080603_36	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0080603_36	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080603_37	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080603_37	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0080603_38	PHROG	phrog_8710	NA	unknown function
UHGV-0080603_38	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0080603_38	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0080603_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080603_39	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0080603_40	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0080603_40	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0080603_40	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0080603_40	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0080603_40	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0080603_41	PHROG	phrog_820	major tail protein	tail
UHGV-0080603_41	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0080603_41	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0080603_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080603_42	PHROG	phrog_8300	NA	unknown function
UHGV-0080603_42	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0080603_42	Structural annotation	PF06896	NA	NA
UHGV-0080603_43	PHROG	phrog_8355	NA	unknown function
UHGV-0080603_43	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0080603_43	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0080603_43	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080603_43	Structural annotation	PF06854	NA	NA
UHGV-0080603_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080603_44	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0080603_44	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0080603_44	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0080603_44	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0080603_45	PHROG	phrog_1194	NA	unknown function
UHGV-0080603_45	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0080603_45	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0080603_46	PHROG	phrog_1401	NA	unknown function
UHGV-0080603_46	UniRef90	UniRef90_UPI000A16CD19	NA	NA
UHGV-0080603_46	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0080603_46	Structural annotation	PF07761	NA	NA
UHGV-0080603_47	PHROG	phrog_6616	tail protein	tail
UHGV-0080603_47	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0080603_47	COG	COG4926	Phage-related protein	NA
UHGV-0080603_48	PHROG	phrog_38044	NA	unknown function
UHGV-0080603_48	UniRef90	UniRef90_A0A2V1JQ53	Ig-like domain-containing protein	NA
UHGV-0080603_48	eggNOG-mapper	1410624.JNKK01000045_gene547	NA	NA
UHGV-0080603_48	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0080603_49	PHROG	phrog_1330	tail protein	tail
UHGV-0080603_49	eggNOG-mapper	1437603.BMON_1128	NA	NA
UHGV-0080603_51	PHROG	phrog_199	holin	lysis
UHGV-0080603_51	UniRef90	UniRef90_A0A174PAV2	Phage-related holin (Lysis protein)	NA
UHGV-0080603_51	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0080603_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0080603_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0080603_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0080603_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0080603_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0080603_52	PHROG	phrog_291	endolysin	lysis
UHGV-0080603_52	UniRef90	UniRef90_A0A356C4L5	LysM domain-containing protein	NA
UHGV-0080603_52	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0080603_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0080603_52	Pfam	PF01476	LysM domain	LysM
UHGV-0080603_52	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0080603_52	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0080603_55	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0080603_55	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0080603_55	UniRef90	UniRef90_A0A1H3VXF8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0080603_55	eggNOG-mapper	1408311.JNJM01000002_gene1308	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0080603_55	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0080603_55	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0080603_55	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0080603_56	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0080603_56	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0080603_56	UniRef90	UniRef90_A0A413P9Z2	HicB family protein	NA
UHGV-0080603_56	eggNOG-mapper	1408311.JNJM01000002_gene1307	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0080603_56	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0080603_56	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0080603_56	Structural annotation	PF15919, COG1598	NA	NA