UHGV-0080607

Genome information

Genome length 46,010 bps

CDS count 58

Completeness 89.85% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080607
vOTU ID	vOTU-015871
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157065
BioSample	SAMEA2784482
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.26
Jumbo phage	No

Genome content
Genome length	46,010 bps
GC content	40.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.48%
Average CDS length	720.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080607_1	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0080607_1	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0080607_1	UniRef90	UniRef90_UPI0015F455B4	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0080607_1	eggNOG-mapper	411474.COPEUT_02341	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	NA
UHGV-0080607_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0080607_1	Pfam	PF07638	ECF sigma factor	Sigma70_ECF
UHGV-0080607_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0080607_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0080607_1	Structural annotation	PF07638, MF_00245, TIGR02954, COG1595	NA	NA
UHGV-0080607_2	KOfam	K14059	int; integrase	NA
UHGV-0080607_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0080607_2	UniRef90	UniRef90_A0A373XME4	Site-specific integrase	NA
UHGV-0080607_2	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0080607_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080607_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080607_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0080607_3	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0080607_4	PHROG	phrog_1914	NA	unknown function
UHGV-0080607_4	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0080607_4	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0080607_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080607_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080607_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080607_5	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0080607_5	eggNOG-mapper	1235793.C809_00679	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080607_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080607_5	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0080607_6	UniRef90	UniRef90_UPI001494A832	helix-turn-helix domain-containing protein	NA
UHGV-0080607_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080607_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0080607_7	PHROG	phrog_3773	NA	unknown function
UHGV-0080607_7	Structural annotation	PF01423, MF_00257, NF041667	NA	NA
UHGV-0080607_8	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0080607_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0080607_8	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0080607_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080607_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080607_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0080607_9	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0080607_9	eggNOG-mapper	1283300.ATXB01000001_gene1737	DNA excision	NA
UHGV-0080607_9	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0080607_9	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0080607_9	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0080607_9	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0080607_13	PHROG	phrog_408	NA	unknown function
UHGV-0080607_14	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080607_14	UniRef90	UniRef90_A0A412L7W2	NA	NA
UHGV-0080607_14	eggNOG-mapper	1151292.QEW_2472	NA	NA
UHGV-0080607_14	Pfam	PF10926	NA	DUF2800
UHGV-0080607_14	COG	COG2887	RecB family exonuclease	NA
UHGV-0080607_14	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0080607_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080607_15	UniRef90	UniRef90_A0A412UNI7	NA	NA
UHGV-0080607_15	eggNOG-mapper	573061.Clocel_0760	NA	NA
UHGV-0080607_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0080607_15	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0080607_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0080607_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0080607_16	UniRef90	UniRef90_A0A412UNJ8	POLAc domain-containing protein	NA
UHGV-0080607_16	eggNOG-mapper	1296660.S5M5X4_9CAUD	DNA polymerase family A	NA
UHGV-0080607_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0080607_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0080607_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080607_17	UniRef90	UniRef90_UPI001D06E26F	virulence-associated E family protein	NA
UHGV-0080607_17	eggNOG-mapper	536232.CLM_2670	virulence-associated E family protein	NA
UHGV-0080607_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0080607_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0080607_17	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0080607_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080607_18	UniRef90	UniRef90_A0A412UNG8	VRR-NUC domain-containing protein	NA
UHGV-0080607_18	eggNOG-mapper	97138.C820_00219	VRR-NUC domain-containing protein	NA
UHGV-0080607_18	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0080607_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0080607_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080607_19	UniRef90	UniRef90_A0A412L7W0	ATP-dependent helicase	NA
UHGV-0080607_19	eggNOG-mapper	97138.C820_00220	snf2 family	NA
UHGV-0080607_19	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0080607_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0080607_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0080607_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0080607_19	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0080607_21	Structural annotation	PF18337, MF_01194, NF000331, COG1862	NA	NA
UHGV-0080607_22	PHROG	phrog_8684	NA	unknown function
UHGV-0080607_22	UniRef90	UniRef90_A0A412ULY6	YopX domain-containing protein	NA
UHGV-0080607_22	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0080607_22	Pfam	PF09643	YopX protein	YopX
UHGV-0080607_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0080607_24	Structural annotation	TIGR01636	NA	NA
UHGV-0080607_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080607_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0080607_25	UniRef90	UniRef90_A0A2N0ULW5	Phage terminase, large subunit, PBSX family	NA
UHGV-0080607_25	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0080607_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080607_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0080607_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080607_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080607_25	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080607_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080607_26	UniRef90	UniRef90_A0A2N0ULU9	Phage portal protein, putative, A118 family	NA
UHGV-0080607_26	eggNOG-mapper	1304866.K413DRAFT_3035	NA	NA
UHGV-0080607_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080607_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080607_27	UniRef90	UniRef90_A0A2N0ULU5	Putative ADP-ribosyltransferase Certhrax	NA
UHGV-0080607_27	eggNOG-mapper	411470.RUMGNA_02213	Phage minor capsid protein 2	NA
UHGV-0080607_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080607_27	COG	COG2369	NA	NA
UHGV-0080607_27	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0080607_29	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0080607_29	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0080607_29	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0080607_30	PHROG	phrog_2616	NA	unknown function
UHGV-0080607_30	Structural annotation	PF01281	NA	NA
UHGV-0080607_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0080607_31	UniRef90	UniRef90_A0A2N0ULW9	Phage minor structural protein GP20	NA
UHGV-0080607_31	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0080607_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0080607_31	Structural annotation	PF06810	NA	NA
UHGV-0080607_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-0080607_32	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0080607_32	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0080607_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080607_33	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-0080607_33	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0080607_34	PHROG	phrog_3366	NA	unknown function
UHGV-0080607_34	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-0080607_34	Pfam	PF20536	NA	DUF6751
UHGV-0080607_34	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0080607_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080607_35	UniRef90	UniRef90_UPI00189BC4F9	minor capsid protein	NA
UHGV-0080607_35	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0080607_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0080607_35	Structural annotation	PF11114	NA	NA
UHGV-0080607_36	PHROG	phrog_3266	tail completion	connector
UHGV-0080607_36	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-0080607_36	Structural annotation	PF20765	NA	NA
UHGV-0080607_37	PHROG	phrog_3099	NA	unknown function
UHGV-0080607_37	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0080607_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080607_38	PHROG	phrog_11299	NA	unknown function
UHGV-0080607_38	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0080607_38	Structural annotation	PF10666	NA	NA
UHGV-0080607_39	PHROG	phrog_706	NA	unknown function
UHGV-0080607_39	UniRef90	UniRef90_A0A2N0ULW2	Bacteriophage Gp15 protein	NA
UHGV-0080607_39	eggNOG-mapper	1160721.RBI_II00530	Bacteriophage Gp15 protein	NA
UHGV-0080607_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080607_39	Structural annotation	PF06854	NA	NA
UHGV-0080607_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080607_41	UniRef90	UniRef90_A0A2N0ULX3	Phage-related protein	NA
UHGV-0080607_41	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0080607_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0080607_41	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0080607_42	PHROG	phrog_1194	NA	unknown function
UHGV-0080607_42	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0080607_42	Pfam	PF20458	NA	DUF6711
UHGV-0080607_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0080607_43	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0080607_44	PHROG	phrog_5302	tail protein	tail
UHGV-0080607_44	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0080607_44	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0080607_44	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0080607_44	Structural annotation	COG1262	NA	NA
UHGV-0080607_46	PHROG	phrog_1863	NA	unknown function
UHGV-0080607_46	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0080607_46	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0080607_47	PHROG	phrog_443	holin	lysis
UHGV-0080607_47	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0080607_47	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0080607_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0080607_47	Structural annotation	PF16945	NA	NA
UHGV-0080607_48	PHROG	phrog_18591	NA	unknown function
UHGV-0080607_48	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-0080607_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080607_49	PHROG	phrog_1794	amidase	lysis
UHGV-0080607_49	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0080607_49	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080607_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0080607_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080607_49	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0080607_50	KOfam	K14059	int; integrase	NA
UHGV-0080607_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0080607_50	UniRef90	UniRef90_A0A2N0UV19	Integrase	NA
UHGV-0080607_50	eggNOG-mapper	1161902.HMPREF0378_0144	DNA integration	NA
UHGV-0080607_50	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0080607_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080607_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080607_50	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0080607_51	UniRef90	UniRef90_A0A413QAJ4	DNA-binding protein	NA
UHGV-0080607_51	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0080607_54	UniRef90	UniRef90_A0A2N0UV97	Replication initiation factor	NA
UHGV-0080607_54	eggNOG-mapper	397290.C810_03845	Replication initiation factor	NA
UHGV-0080607_54	Pfam	PF02486	Replication initiation factor	Rep_trans
UHGV-0080607_55	eggNOG-mapper	1140001.I571_00067	NA	NA
UHGV-0080607_55	Structural annotation	PF06125, COG3390	NA	NA
UHGV-0080607_56	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0080607_56	UniRef90	UniRef90_A0A413Q9I8	NA	NA
UHGV-0080607_56	eggNOG-mapper	1403946.Q615_SPAC00137G0102	ftsk spoiiie	NA
UHGV-0080607_56	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0080607_56	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0080607_56	Structural annotation	PF01580, MF_00350, TIGR03925, COG0433	NA	NA