UHGV-0080622

Genome information

Genome length 33,214 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080622
vOTU ID	vOTU-005413
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146817
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	82.9
Jumbo phage	No

Genome content
Genome length	33,214 bps
GC content	51.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.38%
Average CDS length	546.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080622_1	PHROG	phrog_7713	NA	unknown function
UHGV-0080622_1	UniRef90	UniRef90_UPI001CFC85B4	pentapeptide repeat-containing protein	NA
UHGV-0080622_1	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0080622_2	PHROG	phrog_9562	NA	unknown function
UHGV-0080622_2	UniRef90	UniRef90_UPI001F42F8B9	NA	NA
UHGV-0080622_2	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0080622_2	Pfam	PF19062	NA	DUF5758
UHGV-0080622_2	COG	COG1357	NA	NA
UHGV-0080622_2	Structural annotation	PF19062	NA	NA
UHGV-0080622_3	UniRef90	UniRef90_UPI000F4D02D5	DivIVA domain-containing protein	NA
UHGV-0080622_3	eggNOG-mapper	356829.BITS_0375	DivIVA protein	NA
UHGV-0080622_3	NCBIFam	TIGR03544.1	DivIVA domain-containing protein	NA
UHGV-0080622_3	COG	COG1566	Multidrug resistance efflux pump EmrA	NA
UHGV-0080622_3	Structural annotation	MF_02011	NA	NA
UHGV-0080622_5	UniRef90	UniRef90_UPI00189800B1	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0080622_5	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0080622_5	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0080622_7	Structural annotation	PF11210	NA	NA
UHGV-0080622_9	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0080622_9	UniRef90	UniRef90_UPI0018C25D64	adenine methyltransferase	NA
UHGV-0080622_9	eggNOG-mapper	479437.Elen_2611	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0080622_9	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0080622_9	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0080622_9	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0080622_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0080622_9	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0080622_10	PHROG	phrog_11324	nucleotide kinase	other
UHGV-0080622_10	UniRef90	UniRef90_A0A415FRF5	NA	NA
UHGV-0080622_10	eggNOG-mapper	35760.BCHO_0869	NA	NA
UHGV-0080622_10	Pfam	PF11753	NA	DUF3310
UHGV-0080622_10	Structural annotation	PF11753	NA	NA
UHGV-0080622_14	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0080622_14	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0080622_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080622_16	UniRef90	UniRef90_A0A261FFH4	YqaJ	NA
UHGV-0080622_16	eggNOG-mapper	1120963.KB894511_gene2520	COG5377 Phage-related protein	NA
UHGV-0080622_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0080622_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0080622_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0080622_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0080622_17	UniRef90	UniRef90_A0A0A7I6S2	Antitoxin	NA
UHGV-0080622_17	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0080622_19	PHROG	phrog_3593	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080622_19	UniRef90	UniRef90_A0A6N0Y922	HNH endonuclease	NA
UHGV-0080622_19	eggNOG-mapper	1147158.K7PJS8_9CAUD	HNH endonuclease	NA
UHGV-0080622_19	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0080622_19	Pfam	PF00847	AP2 domain	AP2
UHGV-0080622_20	Structural annotation	NF001990	NA	NA
UHGV-0080622_21	PHROG	phrog_881	holin	lysis
UHGV-0080622_21	UniRef90	UniRef90_UPI0009BC5838	holin	NA
UHGV-0080622_21	eggNOG-mapper	1504822.CCNO01000015_gene626	Putative phage holin Dp-1	NA
UHGV-0080622_21	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0080622_21	Structural annotation	PF16938	NA	NA
UHGV-0080622_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0080622_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080622_22	UniRef90	UniRef90_UPI001897DF0D	HNH endonuclease	NA
UHGV-0080622_22	eggNOG-mapper	508419.F8J1A6_9CAUD	HNH endonuclease	NA
UHGV-0080622_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0080622_23	PHROG	phrog_13845	NA	unknown function
UHGV-0080622_23	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0080622_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0080622_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0080622_24	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0080622_24	eggNOG-mapper	1399942.U3PBG5_9CAUD	Phage Terminase	NA
UHGV-0080622_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0080622_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0080622_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0080622_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080622_25	UniRef90	UniRef90_A0A075KQ80	Putative portal protein	NA
UHGV-0080622_25	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0080622_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080622_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0080622_25	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080622_26	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080622_26	UniRef90	UniRef90_U3PCR9	GIY-YIG domain-containing protein	NA
UHGV-0080622_26	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0080622_26	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0080622_26	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0080622_27	KOfam	K06904	NA	NA
UHGV-0080622_27	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0080622_27	UniRef90	UniRef90_A0A843HVM4	HK97 family phage prohead protease	NA
UHGV-0080622_27	eggNOG-mapper	1399942.U3PIW1_9CAUD	peptidase activity	NA
UHGV-0080622_27	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0080622_27	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0080622_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0080622_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080622_28	UniRef90	UniRef90_A0A075KK19	Putative major head protein	NA
UHGV-0080622_28	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0080622_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080622_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080622_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080622_29	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0080622_29	UniRef90	UniRef90_A0A843HRZ6	Phage gp6-like head-tail connector protein	NA
UHGV-0080622_29	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0080622_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0080622_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0080622_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-0080622_30	UniRef90	UniRef90_F8J165	Putative head-tail adaptor	NA
UHGV-0080622_30	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0080622_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0080622_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0080622_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0080622_31	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0080622_31	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0080622_31	Structural annotation	TIGR01725	NA	NA
UHGV-0080622_32	PHROG	phrog_78	tail terminator	connector
UHGV-0080622_32	eggNOG-mapper	1234664.AMRO01000024_gene1813	NA	NA
UHGV-0080622_32	Structural annotation	PF05657	NA	NA
UHGV-0080622_33	PHROG	phrog_88	major tail protein	tail
UHGV-0080622_33	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0080622_33	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0080622_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0080622_33	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0080622_34	PHROG	phrog_2115	tail protein	tail
UHGV-0080622_34	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0080622_34	Structural annotation	PF11836	NA	NA
UHGV-0080622_36	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0080622_36	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0080622_36	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0080622_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0080622_36	Structural annotation	PF16591	NA	NA
UHGV-0080622_37	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0080622_37	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0080622_37	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0080622_37	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0080622_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0080622_39	KOfam	K07273	acm; lysozyme	NA
UHGV-0080622_39	PHROG	phrog_291	endolysin	lysis
UHGV-0080622_39	UniRef90	UniRef90_UPI001CFF4E3C	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0080622_39	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0080622_39	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0080622_39	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0080622_39	Pfam	PF01476	LysM domain	LysM
UHGV-0080622_39	COG	COG1388	LysM repeat	NA
UHGV-0080622_39	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0080622_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0080622_41	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0080622_41	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0080622_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0080622_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0080622_41	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0080622_42	PHROG	phrog_372	tail protein	tail
UHGV-0080622_42	UniRef90	UniRef90_UPI0018E46574	NA	NA
UHGV-0080622_42	eggNOG-mapper	658655.HMPREF0988_00525	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0080622_42	Pfam	PF05895	NA	DUF859
UHGV-0080622_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0080622_42	Structural annotation	PF05895, MF_04116, NF040520, COG1361	NA	NA
UHGV-0080622_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0080622_43	PHROG	phrog_95	integrase	integration and excision
UHGV-0080622_43	UniRef90	UniRef90_A0A357CY15	Recombinase family protein (Fragment)	NA
UHGV-0080622_43	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0080622_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0080622_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0080622_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080622_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080622_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080622_44	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0080622_45	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0080622_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0080622_47	UniRef90	UniRef90_UPI001030DCF8	siphovirus Gp157 family protein	NA
UHGV-0080622_47	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0080622_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0080622_47	Structural annotation	PF05565	NA	NA
UHGV-0080622_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080622_48	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0080622_48	eggNOG-mapper	97138.C820_00777	ERF superfamily	NA
UHGV-0080622_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0080622_48	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0080622_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080622_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080622_50	UniRef90	UniRef90_A0A7W7D8E6	Single-stranded DNA-binding protein	NA
UHGV-0080622_50	eggNOG-mapper	718252.FP2_01010	Single-strand binding protein family	NA
UHGV-0080622_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080622_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080622_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080622_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0080622_51	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0080622_51	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0080622_51	UniRef90	UniRef90_A0A6A2VG41	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0080622_51	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0080622_51	Pfam	PF00692	dUTPase	dUTPase
UHGV-0080622_51	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0080622_51	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0080622_51	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0080622_52	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080622_52	UniRef90	UniRef90_UPI0018F8AE25	NA	NA
UHGV-0080622_52	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-0080622_52	Pfam	PF06356	NA	DUF1064
UHGV-0080622_52	Structural annotation	PF06356	NA	NA
UHGV-0080622_53	PHROG	phrog_6969	NA	unknown function
UHGV-0080622_53	UniRef90	UniRef90_E7FQH0	DnaD domain protein	NA
UHGV-0080622_53	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0080622_53	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0080622_53	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0080622_54	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0080622_54	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0080622_54	UniRef90	UniRef90_A0A6B9SRH5	DNA replication protein	NA
UHGV-0080622_54	eggNOG-mapper	1280698.AUJS01000037_gene120	IstB-like ATP binding protein	NA
UHGV-0080622_54	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0080622_54	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0080622_54	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0080622_54	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA