UHGV-0080655

Genome information

Genome length 41,226 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080655
vOTU ID	vOTU-005414
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151579
BioSample	SAMEA2784493
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.83
Jumbo phage	No

Genome content
Genome length	41,226 bps
GC content	53.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.04%
Average CDS length	636.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080655_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0080655_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0080655_2	UniRef90	UniRef90_A0A2V2F1H4	Prophage_tail domain-containing protein	NA
UHGV-0080655_2	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0080655_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0080655_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0080655_2	COG	COG4926	Phage-related protein	NA
UHGV-0080655_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0080655_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0080655_3	UniRef90	UniRef90_A0A224AT67	Phage tail component	NA
UHGV-0080655_3	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0080655_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0080655_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0080655_4	PHROG	phrog_23464	NA	unknown function
UHGV-0080655_4	eggNOG-mapper	1378168.N510_03078	Tail tape measure protein, TP901 family	NA
UHGV-0080655_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0080655_4	Structural annotation	PF20155	NA	NA
UHGV-0080655_5	Structural annotation	PF17388	NA	NA
UHGV-0080655_6	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0080655_6	UniRef90	UniRef90_A0A401UUY1	S-l_SbsC_C domain-containing protein	NA
UHGV-0080655_6	eggNOG-mapper	755731.Clo1100_0552	NA	NA
UHGV-0080655_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0080655_7	UniRef90	UniRef90_R5X6A1	Putative prophage pi2 protein 38	NA
UHGV-0080655_7	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-0080655_7	Structural annotation	PF05657	NA	NA
UHGV-0080655_8	UniRef90	UniRef90_A0A3A6N4L9	HK97 gp10 family phage protein	NA
UHGV-0080655_8	eggNOG-mapper	1121871.AUAT01000030_gene1030	NA	NA
UHGV-0080655_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0080655_9	UniRef90	UniRef90_A0A1C5VGA9	Bacteriophage head-tail adaptor	NA
UHGV-0080655_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0080655_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0080655_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0080655_10	UniRef90	UniRef90_UPI000C7E234F	head-tail connector protein	NA
UHGV-0080655_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0080655_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0080655_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080655_11	UniRef90	UniRef90_A0A2V2F4M4	Phage major capsid protein	NA
UHGV-0080655_11	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-0080655_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080655_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080655_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080655_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080655_12	PHROG	phrog_16951	NA	unknown function
UHGV-0080655_12	UniRef90	UniRef90_R7FCQ3	SWIM-type domain-containing protein	NA
UHGV-0080655_12	eggNOG-mapper	1121334.KB911067_gene271	NA	NA
UHGV-0080655_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080655_13	UniRef90	UniRef90_A0A2V2F814	Phage portal protein	NA
UHGV-0080655_13	eggNOG-mapper	447909.A6M949_9VIRU	Phage portal protein	NA
UHGV-0080655_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080655_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0080655_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080655_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0080655_14	UniRef90	UniRef90_A0A2V2F1G6	Terminase large subunit	NA
UHGV-0080655_14	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0080655_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0080655_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0080655_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0080655_14	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0080655_15	PHROG	phrog_20533	NA	unknown function
UHGV-0080655_15	UniRef90	UniRef90_A0A413FXL7	PLD phosphodiesterase domain-containing protein	NA
UHGV-0080655_15	eggNOG-mapper	1392490.JHZX01000001_gene2429	NA	NA
UHGV-0080655_15	Structural annotation	PF17941, MF_01918, NF010490, COG3886	NA	NA
UHGV-0080655_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0080655_16	UniRef90	UniRef90_A0A2V2F4M6	Phage terminase small subunit P27 family	NA
UHGV-0080655_16	eggNOG-mapper	1219626.HMPREF1639_07405	phage terminase small subunit	NA
UHGV-0080655_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0080655_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0080655_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0080655_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0080655_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080655_17	UniRef90	UniRef90_A0A3C1H547	HNH domain-containing protein	NA
UHGV-0080655_17	eggNOG-mapper	1219626.HMPREF1639_07400	Endonuclease	NA
UHGV-0080655_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080655_17	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0080655_18	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0080655_18	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080655_18	UniRef90	UniRef90_A0A2V2F792	DEAD/DEAH box helicase	NA
UHGV-0080655_18	eggNOG-mapper	693746.OBV_01800	snf2 family	NA
UHGV-0080655_18	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0080655_18	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0080655_18	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0080655_18	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0080655_19	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080655_19	UniRef90	UniRef90_A0A2V2F7Z4	VRR-NUC domain-containing protein	NA
UHGV-0080655_19	eggNOG-mapper	693746.OBV_43140	VRR_NUC	NA
UHGV-0080655_19	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0080655_19	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0080655_20	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0080655_20	UniRef90	UniRef90_A0A2V2F9U4	Methyltransferase	NA
UHGV-0080655_20	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0080655_20	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0080655_20	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0080655_20	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0080655_22	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080655_22	UniRef90	UniRef90_A0A2V2F1J5	Virulence-associated protein E	NA
UHGV-0080655_22	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0080655_22	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0080655_22	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0080655_22	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0080655_24	PHROG	phrog_474	phosphofructokinase	other
UHGV-0080655_24	UniRef90	UniRef90_A0A2V2F4L6	NA	NA
UHGV-0080655_24	eggNOG-mapper	1123247.AUIJ01000002_gene2234	NA	NA
UHGV-0080655_24	Pfam	PF19905	NA	DUF6378
UHGV-0080655_24	Structural annotation	PF19905	NA	NA
UHGV-0080655_25	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0080655_25	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0080655_25	UniRef90	UniRef90_A0A2V2F6Y3	FAD-dependent thymidylate synthase	NA
UHGV-0080655_25	eggNOG-mapper	509191.AEDB02000067_gene837	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0080655_25	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0080655_25	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0080655_25	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0080655_25	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0080655_27	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0080655_27	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0080655_27	UniRef90	UniRef90_A0A2V2F1F7	POLAc domain-containing protein	NA
UHGV-0080655_27	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0080655_27	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0080655_27	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0080655_27	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0080655_28	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080655_28	UniRef90	UniRef90_A0A2V2F888	NA	NA
UHGV-0080655_28	eggNOG-mapper	693746.OBV_01850	NA	NA
UHGV-0080655_28	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0080655_28	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0080655_29	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080655_29	UniRef90	UniRef90_A0A2V2F786	NA	NA
UHGV-0080655_29	eggNOG-mapper	1120746.CCNL01000014_gene2086	Belongs to the helicase family. UvrD subfamily	NA
UHGV-0080655_29	Pfam	PF10926	NA	DUF2800
UHGV-0080655_29	COG	COG2887	RecB family exonuclease	NA
UHGV-0080655_29	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0080655_31	PHROG	phrog_18562	NA	unknown function
UHGV-0080655_31	eggNOG-mapper	1120746.CCNL01000014_gene2085	NA	NA
UHGV-0080655_36	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0080655_36	PHROG	phrog_6058	NA	unknown function
UHGV-0080655_36	UniRef90	UniRef90_A0A2V2F1E5	HTH cro/C1-type domain-containing protein	NA
UHGV-0080655_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080655_36	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0080655_39	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0080655_39	UniRef90	UniRef90_UPI000C082058	DNA cytosine methyltransferase	NA
UHGV-0080655_39	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0080655_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080655_41	UniRef90	UniRef90_A0A3D5LEN7	XRE family transcriptional regulator	NA
UHGV-0080655_41	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0080655_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080655_43	Pfam	PF10571	Uncharacterised protein family UPF0547	UPF0547
UHGV-0080655_43	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0080655_44	KOfam	K14059	int; integrase	NA
UHGV-0080655_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0080655_44	UniRef90	UniRef90_H1CAF7	Tyr recombinase domain-containing protein	NA
UHGV-0080655_44	eggNOG-mapper	552396.HMPREF0863_00330	Belongs to the 'phage' integrase family	NA
UHGV-0080655_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080655_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080655_44	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0080655_48	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0080655_48	UniRef90	UniRef90_A0A2V2F7A3	HTH cro/C1-type domain-containing protein	NA
UHGV-0080655_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080655_48	COG	COG1680	CubicO group peptidase, beta-lactamase class C family	NA
UHGV-0080655_50	UniRef90	UniRef90_R6RYB6	Thermophilus bacteriophage protein	NA
UHGV-0080655_52	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0080655_52	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0080655_52	UniRef90	UniRef90_A0A2W4GVA2	XRE family transcriptional regulator	NA
UHGV-0080655_52	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0080655_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080655_52	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0080655_52	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0080655_53	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080655_53	PHROG	phrog_435	endolysin	lysis
UHGV-0080655_53	UniRef90	UniRef90_A0A3D2AA77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080655_53	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0080655_53	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0080655_53	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080655_53	Structural annotation	PF01520, PF19087, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0080655_54	PHROG	phrog_1129	holin	lysis
UHGV-0080655_54	UniRef90	UniRef90_R6H6W8	Putative holin	NA
UHGV-0080655_54	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0080655_54	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0080655_54	Structural annotation	PF06946	NA	NA
UHGV-0080655_55	UniRef90	UniRef90_A0A2V2F4N2	Branched-chain amino acid ABC transporter permease	NA
UHGV-0080655_55	eggNOG-mapper	742740.HMPREF9474_03521	NA	NA
UHGV-0080655_56	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0080655_56	eggNOG-mapper	1381751.JAJB01000050_gene159	NA	NA
UHGV-0080655_56	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0080655_56	Structural annotation	PF14600	NA	NA