UHGV-0080670

Genome information

Genome length 33,651 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080670
vOTU ID	vOTU-054304
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157117
BioSample	SAMEA2784482
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	70.17
Jumbo phage	No

Genome content
Genome length	33,651 bps
GC content	35.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	88.85%
Average CDS length	555.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080670_2	UniRef90	UniRef90_UPI001CCE598C	NA	NA
UHGV-0080670_2	eggNOG-mapper	218140.BPSY_0245	NA	NA
UHGV-0080670_3	UniRef90	UniRef90_UPI0010D6BC53	NA	NA
UHGV-0080670_3	eggNOG-mapper	218140.BPSY_0245	NA	NA
UHGV-0080670_7	PHROG	phrog_1529	NA	unknown function
UHGV-0080670_7	eggNOG-mapper	1280.SAXN108_1320	NA	NA
UHGV-0080670_7	Structural annotation	PF01381, TIGR02607, COG3655	NA	NA
UHGV-0080670_9	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0080670_9	UniRef90	UniRef90_A0A3S3N5G9	NAD(P)-dependent oxidoreductase	NA
UHGV-0080670_9	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0080670_9	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0080670_9	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0080670_10	PHROG	phrog_121	NA	unknown function
UHGV-0080670_10	UniRef90	UniRef90_UPI0013FDCA01	NA	NA
UHGV-0080670_10	eggNOG-mapper	1215915.BN193_09155	NA	NA
UHGV-0080670_10	Pfam	PF07852	NA	DUF1642
UHGV-0080670_10	Structural annotation	PF07852	NA	NA
UHGV-0080670_12	PHROG	phrog_419	NA	unknown function
UHGV-0080670_12	UniRef90	UniRef90_A0A7U8FU65	Prophage Lp2 protein 33	NA
UHGV-0080670_12	eggNOG-mapper	565664.EFXG_01161	NA	NA
UHGV-0080670_12	Structural annotation	PF14083	NA	NA
UHGV-0080670_13	UniRef90	UniRef90_UPI00050C3867	NA	NA
UHGV-0080670_16	UniRef90	UniRef90_A0A1A7SPD5	NA	NA
UHGV-0080670_16	eggNOG-mapper	186153.Q8SDN2_BPPHD	NA	NA
UHGV-0080670_16	Pfam	PF05339	NA	DUF739
UHGV-0080670_16	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0080670_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0080670_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0080670_17	UniRef90	UniRef90_A0A0D6DW27	Bro family antirepressor	NA
UHGV-0080670_17	eggNOG-mapper	31754.Q38330_9CAUD	DNA binding	NA
UHGV-0080670_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0080670_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0080670_17	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0080670_22	Pfam	PF07083	NA	DUF1351
UHGV-0080670_23	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080670_23	UniRef90	UniRef90_UPI001D06A236	phage recombination protein Bet	NA
UHGV-0080670_23	eggNOG-mapper	862517.HMPREF9225_1660	Phage recombination protein Bet	NA
UHGV-0080670_23	Pfam	PF03837	RecT family	RecT
UHGV-0080670_23	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0080670_23	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0080670_23	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0080670_29	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080670_29	eggNOG-mapper	1220589.CD32_17625	ATP-dependent helicase	NA
UHGV-0080670_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0080670_29	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0080670_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080670_30	PHROG	phrog_833	endolysin	lysis
UHGV-0080670_30	UniRef90	UniRef90_A0A1M4NDT8	AmdI, N-acetylmuramoyl-L-alanine-amidase	NA
UHGV-0080670_30	eggNOG-mapper	1161939.A0A067XGV1_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0080670_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0080670_31	PHROG	phrog_1129	holin	lysis
UHGV-0080670_31	UniRef90	UniRef90_A0A4Q0D5S4	Holin	NA
UHGV-0080670_31	eggNOG-mapper	1158601.I585_01143	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0080670_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0080670_31	Structural annotation	PF06946	NA	NA
UHGV-0080670_32	PHROG	phrog_1009	NA	unknown function
UHGV-0080670_33	PHROG	phrog_24267	NA	unknown function
UHGV-0080670_33	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0080670_33	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0080670_33	COG	COG4675	Phage tail collar domain	NA
UHGV-0080670_35	PHROG	phrog_14448	NA	unknown function
UHGV-0080670_35	UniRef90	UniRef90_A0A1E5GVQ9	BppU_IgG domain-containing protein	NA
UHGV-0080670_35	eggNOG-mapper	930946.AEOP01000044_gene15	NA	NA
UHGV-0080670_35	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0080670_36	PHROG	phrog_3558	tail protein	tail
UHGV-0080670_36	UniRef90	UniRef90_A0A1E5GUN1	Prophage_tail domain-containing protein	NA
UHGV-0080670_36	eggNOG-mapper	930946.AEOP01000015_gene780	Prophage endopeptidase tail	NA
UHGV-0080670_36	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0080670_36	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0080670_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0080670_36	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0080670_37	UniRef90	UniRef90_UPI0019D071C6	phage tail protein	NA
UHGV-0080670_37	eggNOG-mapper	1069533.Sinf_0797	phage tail	NA
UHGV-0080670_37	COG	COG4722	Phage-related protein YomH	NA
UHGV-0080670_37	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0080670_38	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0080670_38	UniRef90	UniRef90_UPI000F794E88	tape measure protein	NA
UHGV-0080670_38	eggNOG-mapper	257314.LJ_1425d	SLT domain	NA
UHGV-0080670_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0080670_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0080670_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0080670_38	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0080670_39	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0080670_40	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0080670_40	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0080670_40	Structural annotation	PF12363	NA	NA
UHGV-0080670_41	PHROG	phrog_238	major tail protein	tail
UHGV-0080670_41	UniRef90	UniRef90_A0A1E5GUM2	Phage major tail protein, TP901-1 family	NA
UHGV-0080670_41	eggNOG-mapper	1232453.BAIF02000011_gene3364	Phage tail tube protein	NA
UHGV-0080670_41	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0080670_41	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0080670_41	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080670_42	PHROG	phrog_176	tail terminator	connector
UHGV-0080670_42	UniRef90	UniRef90_UPI0006672DD9	NA	NA
UHGV-0080670_42	eggNOG-mapper	1423724.BAMM01000023_gene1906	NA	NA
UHGV-0080670_42	Structural annotation	PF11367	NA	NA
UHGV-0080670_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0080670_43	UniRef90	UniRef90_UPI00066807BC	HK97 gp10 family phage protein	NA
UHGV-0080670_43	eggNOG-mapper	1123315.AUIP01000003_gene248	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0080670_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0080670_43	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0080670_44	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0080670_44	eggNOG-mapper	930946.AEOP01000024_gene615	NA	NA
UHGV-0080670_45	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0080670_45	UniRef90	UniRef90_A0A0J5S7S2	Phage gp6-like head-tail connector protein	NA
UHGV-0080670_45	eggNOG-mapper	930946.AEOP01000024_gene616	Phage gp6-like head-tail connector protein	NA
UHGV-0080670_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0080670_45	Structural annotation	PF05135	NA	NA
UHGV-0080670_46	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080670_46	UniRef90	UniRef90_A0A0R1TRE4	Phage capsid family protein	NA
UHGV-0080670_46	eggNOG-mapper	1423724.BAMM01000023_gene1910	Phage capsid family	NA
UHGV-0080670_46	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080670_46	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080670_46	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080670_46	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080670_47	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0080670_47	UniRef90	UniRef90_A0A4S2EH01	NA	NA
UHGV-0080670_47	eggNOG-mapper	930946.AEOP01000024_gene618	NA	NA
UHGV-0080670_47	Pfam	PF14265	NA	DUF4355
UHGV-0080670_48	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0080670_48	UniRef90	UniRef90_UPI0014303EFB	minor capsid protein	NA
UHGV-0080670_48	eggNOG-mapper	930946.AEOP01000024_gene619	Phage Mu protein F like protein	NA
UHGV-0080670_48	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0080670_48	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0080670_48	COG	COG2369	NA	NA
UHGV-0080670_48	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0080670_49	PHROG	phrog_64	portal protein	head and packaging
UHGV-0080670_49	UniRef90	UniRef90_A0A829A3V1	SPP1 family phage portal protein	NA
UHGV-0080670_49	eggNOG-mapper	1423724.BAMM01000023_gene1914	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0080670_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0080670_49	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0080670_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0080670_50	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080670_50	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0080670_50	UniRef90	UniRef90_A0A0K8MH97	PBSX family phage terminase, large subunit	NA
UHGV-0080670_50	eggNOG-mapper	930946.AEOP01000024_gene621	Terminase-like family	NA
UHGV-0080670_50	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080670_50	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0080670_50	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080670_50	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080670_50	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0080670_51	PHROG	phrog_2412	NA	unknown function
UHGV-0080670_51	UniRef90	UniRef90_UPI000DE85101	stress-induced protein	NA
UHGV-0080670_51	eggNOG-mapper	226185.EF_2113	Stress-induced bacterial acidophilic repeat motif	NA
UHGV-0080670_52	PHROG	phrog_36652	NA	unknown function
UHGV-0080670_52	UniRef90	UniRef90_A0A2H4FIE3	Methylase	NA
UHGV-0080670_52	eggNOG-mapper	1527692.A0A096XVE4_9CAUD	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0080670_52	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0080670_53	eggNOG-mapper	1314.HKU360_01234	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0080670_53	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0080670_54	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0080670_54	UniRef90	UniRef90_UPI001EE88398	DNA adenine methylase	NA
UHGV-0080670_54	eggNOG-mapper	1329250.WOSG25_240160	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0080670_54	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0080670_54	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12