UHGV-0080702

Genome information

Genome length 35,043 bps

CDS count 46

Completeness 98.40% (high-quality)

geNomad score 0.9668

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080702
vOTU ID	vOTU-078815
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_140339
BioSample	SAMEA2737722
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9668
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.05
Jumbo phage	No

Genome content
Genome length	35,043 bps
GC content	52.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	88.34%
Average CDS length	674.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080702_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0080702_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0080702_1	UniRef90	UniRef90_A0A4Y1WR36	Transposase	NA
UHGV-0080702_1	eggNOG-mapper	997884.HMPREF1068_03093	Belongs to the 'phage' integrase family	NA
UHGV-0080702_1	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0080702_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0080702_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080702_2	Structural annotation	PF20647	NA	NA
UHGV-0080702_3	UniRef90	UniRef90_UPI001CC36B3C	NA	NA
UHGV-0080702_3	eggNOG-mapper	1122971.BAME01000039_gene3564	NA	NA
UHGV-0080702_3	Structural annotation	PF11195	NA	NA
UHGV-0080702_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080702_4	PHROG	phrog_435	endolysin	lysis
UHGV-0080702_4	UniRef90	UniRef90_A0A174BQ54	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080702_4	eggNOG-mapper	679935.Alfi_2718	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080702_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0080702_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080702_4	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0080702_6	PHROG	phrog_38864	NA	unknown function
UHGV-0080702_6	Structural annotation	PF13185, MF_04104, NF041673, COG2203	NA	NA
UHGV-0080702_8	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0080702_8	Structural annotation	PF13385, COG3506	NA	NA
UHGV-0080702_10	PHROG	phrog_21217	NA	unknown function
UHGV-0080702_10	eggNOG-mapper	742767.HMPREF9456_03364	NA	NA
UHGV-0080702_11	PHROG	phrog_14295	NA	unknown function
UHGV-0080702_11	UniRef90	UniRef90_UPI0002F52239	phage tail tape measure protein	NA
UHGV-0080702_11	eggNOG-mapper	1235803.C825_02656	NA	NA
UHGV-0080702_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0080702_12	eggNOG-mapper	742767.HMPREF9456_03308	NA	NA
UHGV-0080702_12	Structural annotation	PF09629, MF_00749, TIGR00739, COG5475	NA	NA
UHGV-0080702_13	PHROG	phrog_33698	NA	unknown function
UHGV-0080702_13	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0080702_13	eggNOG-mapper	357276.EL88_08390	NA	NA
UHGV-0080702_13	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0080702_14	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-0080702_18	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0080702_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080702_20	UniRef90	UniRef90_A0A4Y1WQ08	Nucleoid-structuring protein H-NS	NA
UHGV-0080702_20	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0080702_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080702_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080702_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080702_20	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0080702_21	KOfam	K06904	NA	NA
UHGV-0080702_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0080702_21	UniRef90	UniRef90_UPI000B385EC9	HK97 family phage prohead protease	NA
UHGV-0080702_21	eggNOG-mapper	449673.BACSTE_00581	Caudovirus prohead serine protease	NA
UHGV-0080702_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0080702_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0080702_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0080702_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080702_22	eggNOG-mapper	435590.BVU_2835	Phage portal protein	NA
UHGV-0080702_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080702_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080702_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080702_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0080702_23	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-0080702_23	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0080702_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080702_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0080702_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080702_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080702_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0080702_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0080702_24	UniRef90	UniRef90_A0A316NYX6	Terminase small subunit	NA
UHGV-0080702_24	eggNOG-mapper	742725.HMPREF9450_02101	COG NOG24226 non supervised orthologous group	NA
UHGV-0080702_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0080702_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0080702_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0080702_25	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0080702_27	Structural annotation	NF011227	NA	NA
UHGV-0080702_28	PHROG	phrog_8684	NA	unknown function
UHGV-0080702_28	UniRef90	UniRef90_UPI0018987415	YopX family protein	NA
UHGV-0080702_28	eggNOG-mapper	1347393.HG726022_gene3579	YopX protein	NA
UHGV-0080702_28	Pfam	PF09643	YopX protein	YopX
UHGV-0080702_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0080702_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0080702_29	PHROG	phrog_874	NA	unknown function
UHGV-0080702_29	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0080702_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0080702_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0080702_30	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0080702_30	UniRef90	UniRef90_UPI0018AB7658	DNA cytosine methyltransferase	NA
UHGV-0080702_30	eggNOG-mapper	445970.ALIPUT_01612	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0080702_30	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0080702_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0080702_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080702_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0080702_31	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0080702_31	UniRef90	UniRef90_H1YHN1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0080702_31	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0080702_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0080702_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080702_32	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0080702_32	PHROG	phrog_9562	NA	unknown function
UHGV-0080702_32	UniRef90	UniRef90_UPI001898731D	pentapeptide repeat-containing protein	NA
UHGV-0080702_32	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0080702_32	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0080702_32	Pfam	PF19062	NA	DUF5758
UHGV-0080702_32	COG	COG1357	NA	NA
UHGV-0080702_32	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0080702_33	PHROG	phrog_16304	NA	unknown function
UHGV-0080702_33	UniRef90	UniRef90_UPI001898327E	NA	NA
UHGV-0080702_33	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0080702_33	Pfam	PF19808	NA	DUF6291
UHGV-0080702_34	PHROG	phrog_26490	NA	unknown function
UHGV-0080702_34	eggNOG-mapper	1268240.ATFI01000008_gene2557	NA	NA
UHGV-0080702_35	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0080702_35	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0080702_35	UniRef90	UniRef90_UPI0009DAA602	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0080702_35	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-0080702_35	Pfam	PF12684	NA	DUF3799
UHGV-0080702_35	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0080702_36	PHROG	phrog_14584	NA	unknown function
UHGV-0080702_36	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-0080702_38	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0080702_38	UniRef90	UniRef90_UPI0002F68456	KilA-N domain-containing protein	NA
UHGV-0080702_38	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0080702_38	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0080702_38	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0080702_43	KOfam	K14059	int; integrase	NA
UHGV-0080702_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0080702_43	UniRef90	UniRef90_A0A1Q6GQP6	Tyr recombinase domain-containing protein	NA
UHGV-0080702_43	eggNOG-mapper	1235788.C802_02111	Belongs to the 'phage' integrase family	NA
UHGV-0080702_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0080702_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080702_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080702_43	Structural annotation	PF00589, PF13102, MF_02055, NF040815, COG4974	NA	NA
UHGV-0080702_44	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0080702_44	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0080702_44	UniRef90	UniRef90_UPI001BA4768D	N-6 DNA methylase	NA
UHGV-0080702_44	eggNOG-mapper	411476.BACOVA_03912	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0080702_44	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0080702_44	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0080702_45	Structural annotation	PF11112	NA	NA