UHGV-0080714

Genome information

Genome length 30,809 bps

CDS count 58

Completeness 75.39% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080714
vOTU ID	vOTU-021370
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_141265
BioSample	SAMEA2737763
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.26
Jumbo phage	No

Genome content
Genome length	30,809 bps
GC content	40.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	88.32%
Average CDS length	472.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080714_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0080714_1	UniRef90	UniRef90_A0A7X5DAX3	Bro-N domain-containing protein (Fragment)	NA
UHGV-0080714_1	eggNOG-mapper	1121115.AXVN01000056_gene2483	BRO family, N-terminal domain	NA
UHGV-0080714_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0080714_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0080714_3	UniRef90	UniRef90_UPI00156F727A	helix-turn-helix transcriptional regulator	NA
UHGV-0080714_3	eggNOG-mapper	537007.BLAHAN_06453	sequence-specific DNA binding	NA
UHGV-0080714_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080714_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0080714_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080714_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080714_4	UniRef90	UniRef90_UPI00156E0ED4	helix-turn-helix domain-containing protein	NA
UHGV-0080714_4	eggNOG-mapper	500632.CLONEX_03573	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0080714_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0080714_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080714_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080714_6	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0080714_6	UniRef90	UniRef90_A0A829NQN8	Bro-N domain-containing protein	NA
UHGV-0080714_6	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0080714_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0080714_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0080714_6	Structural annotation	PF02498, NF033622, COG3617	NA	NA
UHGV-0080714_7	PHROG	phrog_706	NA	unknown function
UHGV-0080714_7	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0080714_7	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0080714_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080714_7	Structural annotation	PF06854	NA	NA
UHGV-0080714_8	PHROG	phrog_4450	NA	unknown function
UHGV-0080714_8	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0080714_8	Pfam	PF20378	NA	DUF6673
UHGV-0080714_8	Structural annotation	PF20378	NA	NA
UHGV-0080714_9	PHROG	phrog_3099	NA	unknown function
UHGV-0080714_9	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0080714_9	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0080714_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080714_10	PHROG	phrog_3266	tail completion	connector
UHGV-0080714_10	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-0080714_10	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0080714_10	Structural annotation	PF12691	NA	NA
UHGV-0080714_11	PHROG	phrog_3366	NA	unknown function
UHGV-0080714_11	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0080714_11	Pfam	PF20536	NA	DUF6751
UHGV-0080714_11	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0080714_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080714_12	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0080714_13	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0080714_13	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0080714_13	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0080714_13	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0080714_14	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0080714_14	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0080714_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0080714_15	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-0080714_15	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-0080714_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0080714_15	Structural annotation	PF06810	NA	NA
UHGV-0080714_16	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0080714_16	eggNOG-mapper	1423758.BN55_08460	NA	NA
UHGV-0080714_16	Structural annotation	PF20111	NA	NA
UHGV-0080714_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080714_17	UniRef90	UniRef90_UPI001CD5437D	phage minor capsid protein	NA
UHGV-0080714_17	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0080714_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080714_17	COG	COG2369	NA	NA
UHGV-0080714_17	Structural annotation	PF06152	NA	NA
UHGV-0080714_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080714_18	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-0080714_18	eggNOG-mapper	33035.JPJF01000030_gene2289	NA	NA
UHGV-0080714_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080714_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080714_19	PHROG	phrog_10250	NA	unknown function
UHGV-0080714_19	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-0080714_19	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0080714_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080714_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0080714_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080714_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080714_20	PHROG	phrog_2412	NA	unknown function
UHGV-0080714_20	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0080714_20	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0080714_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080714_21	UniRef90	UniRef90_A7B3S5	Sigma70_r4 domain-containing protein	NA
UHGV-0080714_21	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0080714_21	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0080714_21	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0080714_23	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0080714_25	UniRef90	UniRef90_A0A415S8F5	NA	NA
UHGV-0080714_25	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0080714_25	Pfam	PF04448	NA	DUF551
UHGV-0080714_27	PHROG	phrog_8684	NA	unknown function
UHGV-0080714_27	UniRef90	UniRef90_A0A415S8F9	YopX domain-containing protein	NA
UHGV-0080714_27	eggNOG-mapper	478749.BRYFOR_07591	YopX protein	NA
UHGV-0080714_27	Pfam	PF09643	YopX protein	YopX
UHGV-0080714_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0080714_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0080714_31	PHROG	phrog_25488	NA	unknown function
UHGV-0080714_31	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0080714_32	PHROG	phrog_1163	NA	unknown function
UHGV-0080714_32	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-0080714_32	eggNOG-mapper	1089439.KB902270_gene2602	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0080714_32	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0080714_32	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0080714_32	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0080714_32	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0080714_32	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0080714_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0080714_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080714_33	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0080714_33	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0080714_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0080714_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0080714_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0080714_34	PHROG	phrog_7566	NA	unknown function
UHGV-0080714_34	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0080714_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0080714_35	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0080714_35	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0080714_36	PHROG	phrog_14970	NA	unknown function
UHGV-0080714_36	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0080714_36	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0080714_36	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0080714_37	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0080714_37	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0080714_37	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0080714_37	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0080714_37	Structural annotation	PF05565	NA	NA
UHGV-0080714_40	PHROG	phrog_7964	NA	unknown function
UHGV-0080714_40	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0080714_40	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0080714_40	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0080714_40	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0080714_40	Structural annotation	NF040481	NA	NA
UHGV-0080714_47	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0080714_47	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0080714_47	UniRef90	UniRef90_UPI000E4DC652	antA/AntB antirepressor family protein	NA
UHGV-0080714_47	eggNOG-mapper	1408823.AXUS01000009_gene1978	AntA/AntB antirepressor	NA
UHGV-0080714_47	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0080714_47	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0080714_47	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0080714_50	eggNOG-mapper	62928.azo3783	NA	NA
UHGV-0080714_50	Structural annotation	PF20344, COG3975	NA	NA
UHGV-0080714_52	UniRef90	UniRef90_A0A414UVS4	HTH cro/C1-type domain-containing protein	NA
UHGV-0080714_52	eggNOG-mapper	97139.C824_00059	NA	NA
UHGV-0080714_52	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080714_53	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0080714_53	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0080714_53	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0080714_53	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0080714_53	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0080714_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0080714_53	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0080714_54	UniRef90	UniRef90_A0A2N5PKD3	Phage repressor protein	NA
UHGV-0080714_54	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0080714_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0080714_54	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0080714_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080714_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080714_55	UniRef90	UniRef90_UPI000465BF42	helix-turn-helix domain-containing protein	NA
UHGV-0080714_55	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-0080714_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080714_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080714_55	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0080714_56	PHROG	phrog_87	metallo-protease	other
UHGV-0080714_56	UniRef90	UniRef90_UPI0015EBCD4F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0080714_56	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-0080714_56	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080714_56	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080714_56	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080714_57	PHROG	phrog_7115	NA	unknown function
UHGV-0080714_57	UniRef90	UniRef90_A0A412C4Y3	PH domain-containing protein	NA
UHGV-0080714_57	eggNOG-mapper	476272.RUMHYD_02184	Bacterial PH domain	NA
UHGV-0080714_57	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0080714_58	PHROG	phrog_2695	NA	unknown function
UHGV-0080714_58	UniRef90	UniRef90_A0A3A6CSY7	SIR2_2 domain-containing protein	NA
UHGV-0080714_58	eggNOG-mapper	1408287.AXUR01000026_gene102	NAD+ binding	NA
UHGV-0080714_58	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0080714_58	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0080714_58	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0080714_58	Structural annotation	PF13289	NA	NA