UHGV-0080726

Genome information

Genome length 47,911 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080726
vOTU ID	vOTU-062925
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146279
BioSample	SAMEA2737747
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.16
Jumbo phage	No

Genome content
Genome length	47,911 bps
GC content	43.15%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	89.19%
Average CDS length	598.29 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080726_3	eggNOG-mapper	657322.FPR_28880	S1 RNA binding domain protein	NA
UHGV-0080726_3	COG	COG0539	Ribosomal protein S1	NA
UHGV-0080726_6	PHROG	phrog_13160	NA	unknown function
UHGV-0080726_6	UniRef90	UniRef90_UPI001EDA756F	zinc ribbon domain-containing protein	NA
UHGV-0080726_7	UniRef90	UniRef90_UPI000EFC0AAB	DNA-binding protein	NA
UHGV-0080726_8	UniRef90	UniRef90_UPI0011C3B561	NA	NA
UHGV-0080726_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0080726_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080726_9	UniRef90	UniRef90_UPI000E392D0B	HNH endonuclease	NA
UHGV-0080726_9	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0080726_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0080726_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080726_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0080726_11	UniRef90	UniRef90_UPI0015FA7366	phage terminase small subunit P27 family	NA
UHGV-0080726_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0080726_11	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0080726_11	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0080726_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0080726_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0080726_12	UniRef90	UniRef90_UPI000EFAEBC4	terminase large subunit	NA
UHGV-0080726_12	eggNOG-mapper	1347393.HG726026_gene2611	Phage Terminase	NA
UHGV-0080726_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0080726_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0080726_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0080726_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0080726_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080726_13	UniRef90	UniRef90_UPI000EFC0CE6	phage portal protein	NA
UHGV-0080726_13	eggNOG-mapper	1347393.HG726026_gene2612	Phage portal protein	NA
UHGV-0080726_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080726_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0080726_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0080726_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080726_14	KOfam	K06904	NA	NA
UHGV-0080726_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0080726_14	UniRef90	UniRef90_UPI000F00EFDD	HK97 family phage prohead protease	NA
UHGV-0080726_14	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0080726_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0080726_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0080726_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0080726_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0080726_15	PHROG	phrog_617	major head protein	head and packaging
UHGV-0080726_15	UniRef90	UniRef90_UPI0018AC12B5	phage major capsid protein	NA
UHGV-0080726_15	eggNOG-mapper	1347393.HG726026_gene2614	Phage capsid family	NA
UHGV-0080726_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080726_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080726_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080726_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080726_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0080726_16	UniRef90	UniRef90_UPI0018ABD3B6	head-tail connector protein	NA
UHGV-0080726_16	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-0080726_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0080726_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0080726_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0080726_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0080726_17	UniRef90	UniRef90_UPI000EFB77D5	phage head closure protein	NA
UHGV-0080726_17	eggNOG-mapper	1347393.HG726020_gene893	Phage head-tail joining protein	NA
UHGV-0080726_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0080726_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0080726_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0080726_18	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0080726_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0080726_19	UniRef90	UniRef90_UPI000F00A35C	NA	NA
UHGV-0080726_19	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0080726_19	Pfam	PF11367	NA	DUF3168
UHGV-0080726_19	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0080726_20	PHROG	phrog_1407	major tail protein	tail
UHGV-0080726_20	UniRef90	UniRef90_UPI0018AC0466	phage tail tube protein	NA
UHGV-0080726_20	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-0080726_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0080726_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080726_23	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0080726_23	UniRef90	UniRef90_UPI000EFBF3FC	phage tail tape measure protein	NA
UHGV-0080726_23	eggNOG-mapper	1197719.A464_1008	tail length tape measure	NA
UHGV-0080726_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0080726_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0080726_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0080726_23	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0080726_24	PHROG	phrog_30639	NA	unknown function
UHGV-0080726_24	eggNOG-mapper	411901.BACCAC_00723	NA	NA
UHGV-0080726_24	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0080726_25	PHROG	phrog_26019	NA	unknown function
UHGV-0080726_25	UniRef90	UniRef90_A0A4S2EEH8	Peptidase S74 domain-containing protein	NA
UHGV-0080726_25	eggNOG-mapper	1122931.AUAE01000036_gene1066	Chaperone of endosialidase	NA
UHGV-0080726_25	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0080726_25	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0080726_26	eggNOG-mapper	272559.BF9343_2202	NA	NA
UHGV-0080726_29	PHROG	phrog_15037	NA	unknown function
UHGV-0080726_29	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0080726_29	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0080726_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0080726_30	PHROG	phrog_873	endolysin	head and packaging
UHGV-0080726_30	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-0080726_30	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-0080726_31	PHROG	phrog_872	NA	unknown function
UHGV-0080726_31	UniRef90	UniRef90_UPI001C702C0A	NA	NA
UHGV-0080726_31	eggNOG-mapper	357276.EL88_22925	NA	NA
UHGV-0080726_31	Pfam	PF11195	NA	DUF2829
UHGV-0080726_31	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0080726_31	Structural annotation	PF11195	NA	NA
UHGV-0080726_32	PHROG	phrog_26448	NA	unknown function
UHGV-0080726_32	eggNOG-mapper	411477.PARMER_02011	NA	NA
UHGV-0080726_32	Pfam	PF20647	NA	DUF6808
UHGV-0080726_32	Structural annotation	PF20647	NA	NA
UHGV-0080726_33	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0080726_34	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0080726_34	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0080726_34	UniRef90	UniRef90_A0A496E3H5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0080726_34	eggNOG-mapper	118173.KB235914_gene2543	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0080726_34	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0080726_34	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0080726_35	UniRef90	UniRef90_A0A496DZ79	Type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0080726_35	eggNOG-mapper	929556.Solca_2323	NA	NA
UHGV-0080726_35	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0080726_35	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0080726_36	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0080726_37	UniRef90	UniRef90_A0A7M1RVK1	Nuclear pore complex-like protein	NA
UHGV-0080726_43	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0080726_43	UniRef90	UniRef90_UPI001C390422	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0080726_43	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-0080726_43	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0080726_43	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0080726_45	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0080726_45	PHROG	phrog_3193	NA	unknown function
UHGV-0080726_45	UniRef90	UniRef90_A0A173VGZ5	ASCH domain	NA
UHGV-0080726_45	eggNOG-mapper	1347393.HG726021_gene398	ASCH domain	NA
UHGV-0080726_45	Pfam	PF04266	ASCH domain	ASCH
UHGV-0080726_45	Structural annotation	COG4933	NA	NA
UHGV-0080726_47	PHROG	phrog_8684	NA	unknown function
UHGV-0080726_47	UniRef90	UniRef90_A0A3L7ZFQ7	YopX domain-containing protein	NA
UHGV-0080726_47	eggNOG-mapper	435591.BDI_0866	YopX protein	NA
UHGV-0080726_47	Pfam	PF09643	YopX protein	YopX
UHGV-0080726_47	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0080726_47	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0080726_49	PHROG	phrog_874	NA	unknown function
UHGV-0080726_49	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0080726_49	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0080726_50	UniRef90	UniRef90_F3PFX8	Conserved domain protein	NA
UHGV-0080726_50	eggNOG-mapper	483216.BACEGG_01967	NA	NA
UHGV-0080726_53	eggNOG-mapper	471870.BACINT_00443	NA	NA
UHGV-0080726_54	UniRef90	UniRef90_UPI001E397DDC	DNA cytosine methyltransferase	NA
UHGV-0080726_54	eggNOG-mapper	742817.HMPREF9449_01777	DNA methylase	NA
UHGV-0080726_54	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080726_54	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0080726_56	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0080726_56	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0080726_56	UniRef90	UniRef90_D0TA50	ATPase_AAA_core domain-containing protein	NA
UHGV-0080726_56	eggNOG-mapper	411901.BACCAC_01187	DNA-dependent DNA replication	NA
UHGV-0080726_56	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0080726_56	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0080726_56	Structural annotation	PF00308, MF_01919, NF005931, COG1484	NA	NA
UHGV-0080726_57	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0080726_57	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0080726_57	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0080726_57	Structural annotation	PF01978, NF033788, COG1846	NA	NA
UHGV-0080726_58	UniRef90	UniRef90_A0A7K0H746	Acetyltransferase	NA
UHGV-0080726_58	eggNOG-mapper	1358423.N180_03020	NA	NA
UHGV-0080726_59	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080726_59	eggNOG-mapper	457424.BFAG_02412	NA	NA
UHGV-0080726_60	PHROG	phrog_200	lipoprotein	other
UHGV-0080726_60	UniRef90	UniRef90_UPI000E5006F6	SPFH domain-containing protein	NA
UHGV-0080726_60	eggNOG-mapper	742727.HMPREF9447_04889	SPFH Band 7 PHB domain protein	NA
UHGV-0080726_60	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0080726_60	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0080726_64	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0080726_64	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0080726_64	UniRef90	UniRef90_A0A3L7ZFX8	NA	NA
UHGV-0080726_64	eggNOG-mapper	1321820.HMPREF1983_00508	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0080726_64	PADLOC	SspH_00002	SspH	SSP
UHGV-0080726_64	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0080726_64	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0080726_64	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0080726_64	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0080726_64	Structural annotation	PF17854, PF12684, PF01580, MF_03030, MF_00350, NF041214, TIGR01896, COG1674	NA	NA
UHGV-0080726_65	PHROG	phrog_3657	NA	unknown function
UHGV-0080726_65	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-0080726_65	Structural annotation	PF04404	NA	NA
UHGV-0080726_66	PHROG	phrog_15773	NA	unknown function
UHGV-0080726_72	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0080726_72	UniRef90	UniRef90_UPI001F28A013	XRE family transcriptional regulator	NA
UHGV-0080726_72	eggNOG-mapper	1121100.JCM6294_1579	Transcriptional regulator	NA
UHGV-0080726_72	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0080726_72	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0080726_72	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA