UHGV-0080801

Genome information

Genome length 28,396 bps

CDS count 51

Completeness 77.49% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080801
vOTU ID	vOTU-039220
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158632
BioSample	SAMEA3136692
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.94
Jumbo phage	No

Genome content
Genome length	28,396 bps
GC content	42.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.48%
Average CDS length	506.59 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080801_1	KOfam	K14059	int; integrase	NA
UHGV-0080801_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0080801_1	UniRef90	UniRef90_D9R5C3	Integrase family protein	NA
UHGV-0080801_1	eggNOG-mapper	610130.Closa_0703	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0080801_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0080801_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080801_1	Structural annotation	PF00589, MF_01808, TIGR02225, NF041908, COG4974, COG3422	NA	NA
UHGV-0080801_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080801_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080801_3	UniRef90	UniRef90_UPI001D08C6DE	helix-turn-helix domain-containing protein	NA
UHGV-0080801_3	eggNOG-mapper	471875.RUMLAC_01755	sequence-specific DNA binding	NA
UHGV-0080801_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080801_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080801_3	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0080801_5	Pfam	PF08279	HTH domain	HTH_11
UHGV-0080801_7	eggNOG-mapper	411902.CLOBOL_05675	NA	NA
UHGV-0080801_9	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0080801_9	UniRef90	UniRef90_A0A174R1I9	Restriction alleviation protein, Lar family	NA
UHGV-0080801_9	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0080801_9	Pfam	PF04448	NA	DUF551
UHGV-0080801_14	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0080801_14	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0080801_14	UniRef90	UniRef90_A0A174WGT9	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0080801_14	eggNOG-mapper	610130.Closa_0735	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0080801_14	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0080801_14	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0080801_14	COG	COG0338	DNA-adenine methylase	NA
UHGV-0080801_14	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0080801_16	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0080801_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080801_16	UniRef90	UniRef90_UPI001A9B026E	helix-turn-helix domain-containing protein	NA
UHGV-0080801_16	eggNOG-mapper	1469948.JPNB01000001_gene2110	NA	NA
UHGV-0080801_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080801_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080801_16	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0080801_18	Structural annotation	PF11132, NF007981	NA	NA
UHGV-0080801_19	PHROG	phrog_2600	NA	unknown function
UHGV-0080801_19	eggNOG-mapper	742740.HMPREF9474_03130	NA	NA
UHGV-0080801_22	UniRef90	UniRef90_UPI00164D7607	NA	NA
UHGV-0080801_23	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0080801_23	PHROG	phrog_1	integrase	integration and excision
UHGV-0080801_23	UniRef90	UniRef90_A0A174XQN6	Site-specific recombinase XerD	NA
UHGV-0080801_23	eggNOG-mapper	762984.HMPREF9445_01343	Belongs to the 'phage' integrase family	NA
UHGV-0080801_23	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0080801_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080801_23	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080801_23	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0080801_24	PHROG	phrog_25231	NA	unknown function
UHGV-0080801_24	Structural annotation	PF04936	NA	NA
UHGV-0080801_25	PHROG	phrog_6568	NA	unknown function
UHGV-0080801_25	eggNOG-mapper	742740.HMPREF9474_02283	NA	NA
UHGV-0080801_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0080801_26	eggNOG-mapper	861454.HMPREF9099_00530	sigma factor activity	NA
UHGV-0080801_26	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0080801_26	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0080801_27	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0080801_27	PHROG	phrog_216	integrase	integration and excision
UHGV-0080801_27	UniRef90	UniRef90_A0A174XIE7	Site-specific recombinase XerD	NA
UHGV-0080801_27	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0080801_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080801_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080801_27	Structural annotation	PF00589, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0080801_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0080801_29	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0080801_29	eggNOG-mapper	318464.IO99_13775	HNH nucleases	NA
UHGV-0080801_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0080801_30	PHROG	phrog_1066	NA	unknown function
UHGV-0080801_30	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0080801_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0080801_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0080801_31	UniRef90	UniRef90_A0A174XWB0	Phage terminase, large subunit	NA
UHGV-0080801_31	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0080801_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0080801_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0080801_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0080801_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0080801_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080801_32	UniRef90	UniRef90_A0A174XIL2	Prophage lambdaBa04, portal protein	NA
UHGV-0080801_32	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0080801_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080801_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0080801_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080801_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0080801_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0080801_33	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0080801_33	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0080801_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0080801_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0080801_33	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0080801_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080801_34	UniRef90	UniRef90_UPI001898529C	phage major capsid protein	NA
UHGV-0080801_34	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0080801_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080801_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080801_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080801_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080801_35	PHROG	phrog_5223	neck protein	connector
UHGV-0080801_35	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0080801_35	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0080801_35	Structural annotation	TIGR01560	NA	NA
UHGV-0080801_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0080801_36	UniRef90	UniRef90_A0A098AU87	Gp16_SPP1: putative phage head-tail adaptor	NA
UHGV-0080801_36	eggNOG-mapper	596315.HMPREF0634_0222	head-tail adaptor	NA
UHGV-0080801_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0080801_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0080801_37	Structural annotation	TIGR01725	NA	NA
UHGV-0080801_38	Structural annotation	PF06141	NA	NA
UHGV-0080801_39	PHROG	phrog_88	major tail protein	tail
UHGV-0080801_39	UniRef90	UniRef90_A0A174XIJ5	Phi13 family phage major tail protein	NA
UHGV-0080801_39	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0080801_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0080801_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0080801_42	PHROG	phrog_33680	NA	unknown function
UHGV-0080801_42	UniRef90	UniRef90_A0A174XMM8	Tail tape measure protein TP901 core region	NA
UHGV-0080801_42	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0080801_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0080801_42	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0080801_43	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0080801_43	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0080801_43	eggNOG-mapper	796940.HMPREF9628_00134	NA	NA
UHGV-0080801_43	NCBIFam	NF033679.1	DNRLRE domain-containing protein	NA
UHGV-0080801_43	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0080801_44	PHROG	phrog_26795	NA	unknown function
UHGV-0080801_44	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0080801_44	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0080801_45	PHROG	phrog_12764	NA	unknown function
UHGV-0080801_45	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0080801_46	UniRef90	UniRef90_UPI00189CFC02	BppU family phage baseplate upper protein	NA
UHGV-0080801_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0080801_47	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0080801_48	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0080801_49	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0080801_49	PHROG	phrog_819	tail protein	tail
UHGV-0080801_49	UniRef90	UniRef90_A0A7G5N2U2	Collagen-like protein	NA
UHGV-0080801_49	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0080801_49	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0080801_49	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA