UHGV-0080862

Genome information

Genome length 41,222 bps

CDS count 61

Completeness 96.92% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0080862
vOTU ID	vOTU-079144
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_154201
BioSample	SAMEA2784460
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.24
Jumbo phage	No

Genome content
Genome length	41,222 bps
GC content	43.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	94.88%
Average CDS length	643.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080862_1	KOfam	K14059	int; integrase	NA
UHGV-0080862_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0080862_1	UniRef90	UniRef90_A0A3D5T9L7	Site-specific integrase	NA
UHGV-0080862_1	eggNOG-mapper	585501.HMPREF6123_0870	Phage integrase family	NA
UHGV-0080862_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0080862_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080862_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080862_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0080862_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0080862_2	PHROG	phrog_19856	NA	unknown function
UHGV-0080862_2	UniRef90	UniRef90_A0A1C5ZNG9	Restriction endonuclease	NA
UHGV-0080862_2	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0080862_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0080862_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0080862_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0080862_3	PHROG	phrog_87	metallo-protease	other
UHGV-0080862_3	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0080862_3	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0080862_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0080862_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0080862_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0080862_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0080862_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0080862_4	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-0080862_4	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0080862_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080862_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0080862_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080862_5	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0080862_5	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0080862_5	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0080862_6	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-0080862_7	PHROG	phrog_4973	NA	unknown function
UHGV-0080862_7	UniRef90	UniRef90_UPI00164C643F	helix-turn-helix domain-containing protein	NA
UHGV-0080862_7	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0080862_7	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0080862_9	Structural annotation	PF00412	NA	NA
UHGV-0080862_12	PHROG	phrog_674	NA	unknown function
UHGV-0080862_12	UniRef90	UniRef90_UPI00164B4F86	NA	NA
UHGV-0080862_12	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0080862_12	Pfam	PF07083	NA	DUF1351
UHGV-0080862_12	Structural annotation	PF07083	NA	NA
UHGV-0080862_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0080862_13	UniRef90	UniRef90_UPI00164ACBB4	ERF family protein	NA
UHGV-0080862_13	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0080862_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0080862_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080862_13	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0080862_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0080862_14	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0080862_14	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0080862_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0080862_15	PHROG	phrog_7566	NA	unknown function
UHGV-0080862_15	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0080862_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0080862_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0080862_16	UniRef90	UniRef90_A0A415X901	Single-stranded DNA-binding protein	NA
UHGV-0080862_16	eggNOG-mapper	626523.GCWU000342_01558	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0080862_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0080862_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0080862_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0080862_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0080862_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0080862_17	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080862_17	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-0080862_17	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0080862_17	Pfam	PF06356	NA	DUF1064
UHGV-0080862_17	Structural annotation	PF06356	NA	NA
UHGV-0080862_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0080862_18	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-0080862_18	eggNOG-mapper	1499683.CCFF01000014_gene3932	Transcriptional regulator	NA
UHGV-0080862_18	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0080862_18	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0080862_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0080862_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0080862_19	UniRef90	UniRef90_A0A3R6LJQ7	DNA methylase N-4	NA
UHGV-0080862_19	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0080862_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0080862_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0080862_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0080862_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0080862_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0080862_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0080862_20	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0080862_20	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0080862_20	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0080862_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0080862_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0080862_20	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0080862_21	Structural annotation	PF07453	NA	NA
UHGV-0080862_22	eggNOG-mapper	1235793.C809_02213	NA	NA
UHGV-0080862_23	eggNOG-mapper	1304866.K413DRAFT_4636	NA	NA
UHGV-0080862_23	Structural annotation	PF17457	NA	NA
UHGV-0080862_24	PHROG	phrog_874	NA	unknown function
UHGV-0080862_24	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0080862_24	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0080862_26	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0080862_28	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0080862_28	UniRef90	UniRef90_A0A3R6R5U2	Restriction alleviation protein, Lar family	NA
UHGV-0080862_28	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0080862_28	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0080862_28	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0080862_29	PHROG	phrog_20593	NA	unknown function
UHGV-0080862_31	UniRef90	UniRef90_UPI001C0249A7	ABC transporter ATP-binding protein	NA
UHGV-0080862_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0080862_32	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0080862_32	UniRef90	UniRef90_A0A2S0KPA3	Chromosome partitioning protein ParB	NA
UHGV-0080862_32	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0080862_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0080862_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0080862_32	Pfam	PF14386	NA	DUF4417
UHGV-0080862_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0080862_32	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0080862_33	PHROG	phrog_5234	NA	unknown function
UHGV-0080862_33	UniRef90	UniRef90_A0A6L5T9Q6	Gln_amidase domain-containing protein	NA
UHGV-0080862_33	eggNOG-mapper	78345.BMERY_0883	NA	NA
UHGV-0080862_33	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0080862_33	Structural annotation	PF15644, NF011786	NA	NA
UHGV-0080862_35	PHROG	phrog_9479	NA	unknown function
UHGV-0080862_35	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0080862_35	Structural annotation	PF15529	NA	NA
UHGV-0080862_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0080862_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0080862_36	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0080862_36	eggNOG-mapper	1273103.NM10_06806	Phage terminase large subunit	NA
UHGV-0080862_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0080862_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0080862_36	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0080862_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0080862_37	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0080862_37	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0080862_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0080862_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0080862_38	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0080862_38	eggNOG-mapper	552396.HMPREF0863_00274	Minor capsid protein	NA
UHGV-0080862_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0080862_38	Structural annotation	PF11114	NA	NA
UHGV-0080862_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0080862_39	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0080862_39	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0080862_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0080862_39	COG	COG2369	NA	NA
UHGV-0080862_39	Structural annotation	PF06152	NA	NA
UHGV-0080862_40	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0080862_41	PHROG	phrog_247	major head protein	head and packaging
UHGV-0080862_41	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-0080862_41	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0080862_41	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0080862_41	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0080862_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0080862_42	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0080862_43	PHROG	phrog_3366	NA	unknown function
UHGV-0080862_43	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0080862_43	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0080862_44	Structural annotation	PF12691	NA	NA
UHGV-0080862_45	PHROG	phrog_3099	NA	unknown function
UHGV-0080862_45	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0080862_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0080862_46	PHROG	phrog_11299	NA	unknown function
UHGV-0080862_46	UniRef90	UniRef90_A0A6L5YI08	RNA polymerase subunit sigma	NA
UHGV-0080862_46	Pfam	PF20378	NA	DUF6673
UHGV-0080862_46	Structural annotation	PF10666	NA	NA
UHGV-0080862_47	PHROG	phrog_706	NA	unknown function
UHGV-0080862_47	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0080862_47	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0080862_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0080862_47	Structural annotation	PF06854	NA	NA
UHGV-0080862_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0080862_48	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0080862_48	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0080862_49	PHROG	phrog_1194	NA	unknown function
UHGV-0080862_49	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0080862_49	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0080862_50	PHROG	phrog_13879	NA	unknown function
UHGV-0080862_50	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0080862_50	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0080862_52	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0080862_52	PHROG	phrog_11157	NA	unknown function
UHGV-0080862_52	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0080862_52	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0080862_52	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0080862_52	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0080862_52	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0080862_53	PHROG	phrog_18725	NA	unknown function
UHGV-0080862_53	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0080862_54	Structural annotation	PF00386	NA	NA
UHGV-0080862_56	PHROG	phrog_937	hemolysin	other
UHGV-0080862_57	PHROG	phrog_443	holin	lysis
UHGV-0080862_57	UniRef90	UniRef90_A0A1I0GJE2	Holin, r1t family	NA
UHGV-0080862_57	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0080862_57	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0080862_57	Structural annotation	PF16945	NA	NA
UHGV-0080862_58	KOfam	K07273	acm; lysozyme	NA
UHGV-0080862_58	PHROG	phrog_291	endolysin	lysis
UHGV-0080862_58	UniRef90	UniRef90_A0A1Q9J763	PG_binding_1 domain-containing protein	NA
UHGV-0080862_58	eggNOG-mapper	877424.ATWC01000009_gene1193	Glycosyl hydrolases family 25	NA
UHGV-0080862_58	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0080862_58	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0080862_58	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0080862_60	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0080862_60	UniRef90	UniRef90_A0A3R6XFV5	Tail fiber domain-containing protein	NA
UHGV-0080862_60	eggNOG-mapper	397288.C806_00116	NA	NA
UHGV-0080862_60	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0080862_61	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0080862_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0080862_61	UniRef90	UniRef90_UPI00164B0748	tyrosine-type recombinase/integrase	NA
UHGV-0080862_61	eggNOG-mapper	1235790.C805_00610	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0080862_61	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0080862_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080862_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0080862_61	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA