UHGV-0081127

Genome information

Genome length 28,792 bps

CDS count 43

Completeness 92.06% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081127
vOTU ID	vOTU-079849
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_153536
BioSample	SAMEA2784484
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.48
Jumbo phage	No

Genome content
Genome length	28,792 bps
GC content	50.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	89.52%
Average CDS length	604.81 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081127_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0081127_2	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0081127_2	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0081127_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081127_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0081127_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0081127_2	COG	COG4926	Phage-related protein	NA
UHGV-0081127_2	Structural annotation	PF14594, PF13884, TIGR01665, COG4926	NA	NA
UHGV-0081127_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0081127_3	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0081127_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0081127_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0081127_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0081127_4	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0081127_4	UniRef90	UniRef90_UPI00073E9FDF	phage tail tape measure protein	NA
UHGV-0081127_4	eggNOG-mapper	665956.HMPREF1032_00108	Phage tail tape measure protein, TP901 family	NA
UHGV-0081127_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0081127_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0081127_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0081127_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0081127_5	PHROG	phrog_709	NA	unknown function
UHGV-0081127_5	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0081127_5	Structural annotation	PF11836	NA	NA
UHGV-0081127_6	PHROG	phrog_88	major tail protein	tail
UHGV-0081127_6	UniRef90	UniRef90_A0A1Y3R915	Phage tail protein	NA
UHGV-0081127_6	eggNOG-mapper	1226322.HMPREF1545_00121	phage major tail protein, phi13 family	NA
UHGV-0081127_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0081127_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0081127_7	PHROG	phrog_78	tail terminator	connector
UHGV-0081127_7	eggNOG-mapper	397287.C807_04037	NA	NA
UHGV-0081127_7	Structural annotation	PF20765	NA	NA
UHGV-0081127_8	UniRef90	UniRef90_UPI001D00FAFD	HK97 gp10 family phage protein	NA
UHGV-0081127_8	eggNOG-mapper	411471.SUBVAR_05855	NA	NA
UHGV-0081127_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0081127_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0081127_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0081127_9	UniRef90	UniRef90_UPI001D0B51D6	phage head closure protein	NA
UHGV-0081127_9	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0081127_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0081127_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0081127_10	PHROG	phrog_5223	neck protein	connector
UHGV-0081127_10	UniRef90	UniRef90_UPI0003FE9443	head-tail connector protein	NA
UHGV-0081127_10	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0081127_10	Structural annotation	TIGR01560	NA	NA
UHGV-0081127_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0081127_11	UniRef90	UniRef90_UPI00073E62C9	phage major capsid protein	NA
UHGV-0081127_11	eggNOG-mapper	626523.GCWU000342_01025	Phage capsid family	NA
UHGV-0081127_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0081127_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0081127_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081127_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0081127_12	KOfam	K06904	NA	NA
UHGV-0081127_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0081127_12	UniRef90	UniRef90_A0A1V5IPN6	Caudovirus prohead protease	NA
UHGV-0081127_12	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0081127_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0081127_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0081127_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0081127_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0081127_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0081127_13	UniRef90	UniRef90_A0A316PZH6	Phage portal protein	NA
UHGV-0081127_13	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-0081127_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0081127_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0081127_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0081127_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0081127_14	UniRef90	UniRef90_UPI0018991908	terminase large subunit	NA
UHGV-0081127_14	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0081127_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0081127_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0081127_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0081127_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0081127_15	PHROG	phrog_1066	NA	unknown function
UHGV-0081127_15	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-0081127_15	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0081127_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081127_16	UniRef90	UniRef90_A0A316PY12	HNH endonuclease	NA
UHGV-0081127_16	eggNOG-mapper	397290.C810_00416	HNH endonuclease	NA
UHGV-0081127_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0081127_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0081127_18	PHROG	phrog_11237	NA	unknown function
UHGV-0081127_18	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0081127_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0081127_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0081127_19	UniRef90	UniRef90_A0A1M5ZKP8	DNA replication protein DnaC	NA
UHGV-0081127_19	eggNOG-mapper	926561.KB900624_gene2582	IstB-like ATP binding protein	NA
UHGV-0081127_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0081127_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0081127_20	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0081127_20	UniRef90	UniRef90_R6E0A4	DNA replication protein	NA
UHGV-0081127_20	eggNOG-mapper	1391647.AVSV01000022_gene2531	DnaD domain protein	NA
UHGV-0081127_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0081127_20	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0081127_26	PHROG	phrog_36031	NA	unknown function
UHGV-0081127_26	eggNOG-mapper	1211814.CAPG01000088_gene4027	NA	NA
UHGV-0081127_28	eggNOG-mapper	537013.CLOSTMETH_02028	NA	NA
UHGV-0081127_29	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0081127_29	UniRef90	UniRef90_UPI001EE00C30	ORF6N domain-containing protein	NA
UHGV-0081127_29	eggNOG-mapper	999413.HMPREF1094_02023	ORF6C domain	NA
UHGV-0081127_29	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0081127_29	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0081127_29	Structural annotation	PF10543, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0081127_31	UniRef90	UniRef90_A0A351VD14	ORF6N domain-containing protein	NA
UHGV-0081127_32	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0081127_32	UniRef90	UniRef90_UPI0018A0A793	Rha family transcriptional regulator	NA
UHGV-0081127_32	eggNOG-mapper	610130.Closa_1422	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0081127_32	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0081127_32	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0081127_32	COG	COG3617	Prophage antirepressor	NA
UHGV-0081127_32	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0081127_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081127_34	UniRef90	UniRef90_A0A2V2F4F9	Transcriptional regulator	NA
UHGV-0081127_34	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0081127_34	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0081127_34	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0081127_34	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0081127_35	PHROG	phrog_19315	NA	unknown function
UHGV-0081127_35	UniRef90	UniRef90_A0A1U7MFT1	Double zinc ribbon	NA
UHGV-0081127_35	eggNOG-mapper	742733.HMPREF9469_01856	NA	NA
UHGV-0081127_35	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0081127_35	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0081127_36	PHROG	phrog_888	NA	unknown function
UHGV-0081127_36	eggNOG-mapper	575594.ACOH01000003_gene832	Short C-terminal domain	NA
UHGV-0081127_36	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0081127_37	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0081127_37	PHROG	phrog_95	integrase	integration and excision
UHGV-0081127_37	UniRef90	UniRef90_A0A174SZ32	Resolvase, N terminal domain	NA
UHGV-0081127_37	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0081127_37	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0081127_37	Pfam	PF07508	Recombinase	Recombinase
UHGV-0081127_37	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0081127_37	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0081127_37	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0081127_38	UniRef90	UniRef90_A0A350U007	DNA-binding protein	NA
UHGV-0081127_38	eggNOG-mapper	1408323.JQKK01000033_gene1253	Nucleotidyltransferase domain	NA
UHGV-0081127_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0081127_38	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0081127_38	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA
UHGV-0081127_38	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0081127_40	PHROG	phrog_20258	NA	unknown function
UHGV-0081127_40	eggNOG-mapper	665956.HMPREF1032_02710	NA	NA
UHGV-0081127_41	PHROG	phrog_4105	NA	unknown function
UHGV-0081127_41	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0081127_42	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0081127_42	PHROG	phrog_3393	endolysin	lysis
UHGV-0081127_42	UniRef90	UniRef90_UPI0006D154CD	peptidoglycan-binding protein	NA
UHGV-0081127_42	eggNOG-mapper	1232452.BAIB02000002_gene51	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0081127_42	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA