UHGV-0081168

Genome information

Genome length 32,987 bps

CDS count 52

Completeness 91.48% (high-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081168
vOTU ID	vOTU-077778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_153409
BioSample	SAMEA2784492
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.48% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.72
Jumbo phage	No

Genome content
Genome length	32,987 bps
GC content	50.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.59%
Average CDS length	605.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081168_3	UniRef90	UniRef90_A0A351F9G2	RHH_1 domain-containing protein	NA
UHGV-0081168_3	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0081168_5	PHROG	phrog_263	holin	lysis
UHGV-0081168_5	UniRef90	UniRef90_A0A3D5TN47	Phage holin	NA
UHGV-0081168_5	eggNOG-mapper	315750.BPUM_3085	SPP1 phage holin	NA
UHGV-0081168_5	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0081168_5	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0081168_5	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0081168_6	PHROG	phrog_9428	NA	unknown function
UHGV-0081168_6	UniRef90	UniRef90_A0A3D5TMQ6	Serine/threonine protein kinase	NA
UHGV-0081168_6	eggNOG-mapper	1519439.JPJG01000059_gene1948	NA	NA
UHGV-0081168_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0081168_7	PHROG	phrog_435	endolysin	lysis
UHGV-0081168_7	UniRef90	UniRef90_A0A3D5TMB6	MurNAc-LAA domain-containing protein	NA
UHGV-0081168_7	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0081168_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0081168_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0081168_7	Structural annotation	PF01520, PF15591, MF_00562, TIGR02883, NF033202, COG0860	NA	NA
UHGV-0081168_8	PHROG	phrog_27545	NA	unknown function
UHGV-0081168_8	UniRef90	UniRef90_R6ELD6	Glycosyl hydrolase family 18 family protein	NA
UHGV-0081168_8	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0081168_11	UniRef90	UniRef90_R6HYD9	Collagen triple helix repeat protein	NA
UHGV-0081168_11	Structural annotation	PF08481	NA	NA
UHGV-0081168_13	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0081168_13	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0081168_13	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0081168_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081168_13	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0081168_13	COG	COG4926	Phage-related protein	NA
UHGV-0081168_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0081168_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0081168_14	UniRef90	UniRef90_UPI000BF3CE06	phage tail family protein	NA
UHGV-0081168_14	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0081168_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0081168_14	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0081168_15	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0081168_15	UniRef90	UniRef90_A0A7X8V908	Phage tail protein	NA
UHGV-0081168_15	eggNOG-mapper	394503.Ccel_2825	tape measure	NA
UHGV-0081168_15	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0081168_15	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0081168_16	PHROG	phrog_2115	tail protein	tail
UHGV-0081168_16	Structural annotation	PF11836	NA	NA
UHGV-0081168_17	PHROG	phrog_88	major tail protein	tail
UHGV-0081168_17	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0081168_17	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0081168_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0081168_17	COG	COG5492	NA	NA
UHGV-0081168_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0081168_18	PHROG	phrog_78	tail terminator	connector
UHGV-0081168_18	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0081168_18	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0081168_19	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0081168_19	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0081168_19	Structural annotation	TIGR01725	NA	NA
UHGV-0081168_20	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0081168_20	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0081168_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0081168_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0081168_21	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0081168_21	eggNOG-mapper	279010.BL03506	Phage gp6-like head-tail connector protein	NA
UHGV-0081168_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0081168_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0081168_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0081168_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0081168_22	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0081168_22	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0081168_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0081168_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0081168_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081168_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0081168_23	PHROG	phrog_16951	NA	unknown function
UHGV-0081168_23	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0081168_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0081168_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0081168_24	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0081168_24	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0081168_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0081168_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0081168_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0081168_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0081168_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0081168_25	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0081168_25	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0081168_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0081168_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0081168_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0081168_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0081168_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0081168_26	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0081168_26	eggNOG-mapper	536232.CLM_2059	Phage terminase, small subunit	NA
UHGV-0081168_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0081168_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0081168_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0081168_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0081168_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0081168_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081168_27	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0081168_27	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0081168_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0081168_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0081168_27	Structural annotation	PF05766	NA	NA
UHGV-0081168_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0081168_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0081168_28	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0081168_28	Structural annotation	PF04545	NA	NA
UHGV-0081168_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0081168_30	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0081168_30	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0081168_31	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0081168_35	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0081168_35	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081168_35	UniRef90	UniRef90_UPI00097FDC32	helix-turn-helix domain-containing protein	NA
UHGV-0081168_35	eggNOG-mapper	498761.HM1_0055	sequence-specific DNA binding	NA
UHGV-0081168_35	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0081168_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081168_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081168_35	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0081168_36	PHROG	phrog_15609	NA	unknown function
UHGV-0081168_36	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0081168_36	Pfam	PF11300	NA	DUF3102
UHGV-0081168_36	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0081168_37	PHROG	phrog_8470	NA	unknown function
UHGV-0081168_37	UniRef90	UniRef90_A0A2V2YSA1	PcfJ-like protein	NA
UHGV-0081168_37	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0081168_37	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0081168_37	Structural annotation	PF14284	NA	NA
UHGV-0081168_38	PHROG	phrog_7445	NA	unknown function
UHGV-0081168_38	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0081168_38	eggNOG-mapper	1232449.BAHV02000018_gene1541	PcfK-like protein	NA
UHGV-0081168_38	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0081168_38	Structural annotation	PF14058	NA	NA
UHGV-0081168_39	PHROG	phrog_824	NA	unknown function
UHGV-0081168_39	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0081168_39	eggNOG-mapper	642492.Clole_0728	VRR-NUC domain	NA
UHGV-0081168_39	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0081168_39	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0081168_43	PHROG	phrog_22040	NA	unknown function
UHGV-0081168_43	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0081168_44	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-0081168_44	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0081168_44	Pfam	PF04448	NA	DUF551
UHGV-0081168_44	Structural annotation	PF04448	NA	NA
UHGV-0081168_46	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0081168_46	PHROG	phrog_18750	NA	unknown function
UHGV-0081168_46	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0081168_46	eggNOG-mapper	411483.FAEPRAA2165_01872	Cell wall hydrolase	NA
UHGV-0081168_46	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0081168_46	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0081168_46	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0081168_49	UniRef90	UniRef90_UPI0018C81604	helix-turn-helix domain-containing protein	NA
UHGV-0081168_49	eggNOG-mapper	484770.UFO1_1664	NA	NA
UHGV-0081168_49	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0081168_49	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0081168_50	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0081168_50	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0081168_50	UniRef90	UniRef90_R5L1M5	DNA-binding helix-turn-helix / peptidase S24-like multi-domain protein	NA
UHGV-0081168_50	eggNOG-mapper	320839.Q4ZCJ1_9CAUD	sequence-specific DNA binding	NA
UHGV-0081168_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081168_50	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0081168_50	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0081168_51	Structural annotation	PF08797, TIGR00086	NA	NA
UHGV-0081168_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0081168_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0081168_52	UniRef90	UniRef90_A0A355JGU5	Recombinase family protein	NA
UHGV-0081168_52	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0081168_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0081168_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0081168_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0081168_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0081168_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA