UHGV-0081278

Genome information

Genome length 29,978 bps

CDS count 45

Completeness 75.39% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081278
vOTU ID	vOTU-024974
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_166822
BioSample	SAMEA3136635
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.87
Jumbo phage	No

Genome content
Genome length	29,978 bps
GC content	45.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.78%
Average CDS length	628.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081278_2	UniRef90	UniRef90_A0A0M2G199	Transcriptional regulator	NA
UHGV-0081278_2	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0081278_2	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0081278_3	PHROG	phrog_8834	NA	unknown function
UHGV-0081278_3	UniRef90	UniRef90_A0A1J3C6U7	Autolysin regulatory protein ArpU	NA
UHGV-0081278_3	eggNOG-mapper	543734.LCABL_05720	NA	NA
UHGV-0081278_3	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0081278_3	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0081278_4	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081278_4	UniRef90	UniRef90_A0A7Y7QHQ5	Transposase	NA
UHGV-0081278_4	eggNOG-mapper	146269.A8YQN3_9CAUD	NA	NA
UHGV-0081278_4	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-0081278_4	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-0081278_5	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081278_5	UniRef90	UniRef90_A0A8B3GME9	NUMOD4 motif	NA
UHGV-0081278_5	eggNOG-mapper	39103.U5U4N5_9CAUD	HNH endonuclease	NA
UHGV-0081278_5	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0081278_5	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0081278_5	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0081278_5	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0081278_6	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-0081278_6	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-0081278_6	UniRef90	UniRef90_UPI000FEF1972	ribonucleoside-diphosphate reductase	NA
UHGV-0081278_6	eggNOG-mapper	543734.LCABL_05780	NA	NA
UHGV-0081278_6	Structural annotation	PF13728, MF_01835, NF007657, COG3118	NA	NA
UHGV-0081278_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0081278_7	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0081278_7	UniRef90	UniRef90_A0A2I7R760	DNA methylase	NA
UHGV-0081278_7	eggNOG-mapper	1235794.C811_01554	DNA methylase	NA
UHGV-0081278_7	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0081278_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0081278_7	COG	COG0863	DNA modification methylase	NA
UHGV-0081278_7	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0081278_8	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0081278_8	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0081278_8	UniRef90	UniRef90_A0A512PW71	Terminase small subunit	NA
UHGV-0081278_8	eggNOG-mapper	46256.BBIK01000004_gene686	Terminase small subunit	NA
UHGV-0081278_8	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0081278_8	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0081278_8	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0081278_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081278_9	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0081278_9	UniRef90	UniRef90_UPI000FFB3FB8	phage terminase large subunit	NA
UHGV-0081278_9	eggNOG-mapper	568703.LGG_01125	Terminase RNAseH like domain	NA
UHGV-0081278_9	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0081278_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081278_9	Structural annotation	PF04466	NA	NA
UHGV-0081278_10	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081278_10	UniRef90	UniRef90_UPI00137C355E	NUMOD4 domain-containing protein	NA
UHGV-0081278_10	eggNOG-mapper	525257.HMPREF0204_11331	HNH endonuclease	NA
UHGV-0081278_10	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0081278_10	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0081278_10	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0081278_10	Structural annotation	PF07463	NA	NA
UHGV-0081278_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081278_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0081278_11	UniRef90	UniRef90_A0A179YIA7	PBSX family phage terminase large subunit	NA
UHGV-0081278_11	eggNOG-mapper	568703.LGG_01125	Terminase RNAseH like domain	NA
UHGV-0081278_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0081278_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0081278_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0081278_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081278_11	Structural annotation	PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0081278_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-0081278_12	UniRef90	UniRef90_Q037D1	Phage portal protein, SPP1 Gp6-like protein	NA
UHGV-0081278_12	eggNOG-mapper	543734.LCABL_13250	Phage portal protein	NA
UHGV-0081278_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0081278_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0081278_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0081278_13	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0081278_13	UniRef90	UniRef90_UPI0009122309	minor capsid protein	NA
UHGV-0081278_13	eggNOG-mapper	543734.LCABL_13260	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0081278_13	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0081278_13	COG	COG2369	NA	NA
UHGV-0081278_13	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0081278_14	PHROG	phrog_1233	NA	unknown function
UHGV-0081278_14	UniRef90	UniRef90_Q037D3	NA	NA
UHGV-0081278_14	eggNOG-mapper	764291.STRUR_0789	NA	NA
UHGV-0081278_14	Structural annotation	PF13058	NA	NA
UHGV-0081278_15	PHROG	phrog_12216	NA	unknown function
UHGV-0081278_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0081278_16	UniRef90	UniRef90_Q037D5	NA	NA
UHGV-0081278_16	eggNOG-mapper	543734.LCABL_13270	NA	NA
UHGV-0081278_16	Pfam	PF14265	NA	DUF4355
UHGV-0081278_16	Structural annotation	PF14265	NA	NA
UHGV-0081278_17	PHROG	phrog_909	major head protein	head and packaging
UHGV-0081278_17	UniRef90	UniRef90_Q037D6	NA	NA
UHGV-0081278_17	eggNOG-mapper	543734.LCABL_13280	NA	NA
UHGV-0081278_17	Structural annotation	PF02924	NA	NA
UHGV-0081278_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0081278_18	UniRef90	UniRef90_UPI001E3947D5	major capsid protein	NA
UHGV-0081278_18	eggNOG-mapper	543734.LCABL_13300	Phage major capsid protein E	NA
UHGV-0081278_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0081278_18	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0081278_19	PHROG	phrog_4417	NA	unknown function
UHGV-0081278_19	UniRef90	UniRef90_K6SGT4	NA	NA
UHGV-0081278_19	eggNOG-mapper	543734.LCABL_13320	NA	NA
UHGV-0081278_19	Structural annotation	PF03414, NF041524, COG1442	NA	NA
UHGV-0081278_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0081278_20	UniRef90	UniRef90_UPI001892BCF7	phage head-tail connector protein	NA
UHGV-0081278_20	eggNOG-mapper	543734.LCABL_13330	Phage gp6-like head-tail connector protein	NA
UHGV-0081278_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0081278_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0081278_21	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0081278_21	UniRef90	UniRef90_A0A179VW18	NA	NA
UHGV-0081278_21	eggNOG-mapper	568703.LGG_01131	NA	NA
UHGV-0081278_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0081278_22	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0081278_22	UniRef90	UniRef90_Q037E2	Phage head tail joining protein	NA
UHGV-0081278_22	eggNOG-mapper	543734.LCABL_13350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0081278_22	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0081278_22	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0081278_23	PHROG	phrog_176	tail terminator	connector
UHGV-0081278_23	UniRef90	UniRef90_Q037E3	Phage major structural protein	NA
UHGV-0081278_23	eggNOG-mapper	543734.LCABL_13360	NA	NA
UHGV-0081278_23	Structural annotation	PF11367	NA	NA
UHGV-0081278_24	PHROG	phrog_238	major tail protein	tail
UHGV-0081278_24	UniRef90	UniRef90_A0A806LDX6	Phage tail protein	NA
UHGV-0081278_24	eggNOG-mapper	543734.LCABL_13370	Phage tail tube protein	NA
UHGV-0081278_24	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0081278_24	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0081278_25	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0081278_25	UniRef90	UniRef90_A0A179YBW8	NA	NA
UHGV-0081278_25	eggNOG-mapper	568703.LGG_01135	Phage tail assembly chaperone protein, TAC	NA
UHGV-0081278_25	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0081278_25	Structural annotation	PF12363	NA	NA
UHGV-0081278_26	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0081278_26	UniRef90	UniRef90_A0A179YA89	NA	NA
UHGV-0081278_26	eggNOG-mapper	543734.LCABL_13390	NA	NA
UHGV-0081278_27	PHROG	phrog_1204	tail protein	tail
UHGV-0081278_27	UniRef90	UniRef90_A0A179YCK9	Phage tail length tape measure protein	NA
UHGV-0081278_27	eggNOG-mapper	568703.LGG_01137	phage tail tape measure protein	NA
UHGV-0081278_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0081278_27	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0081278_27	COG	COG5412	Phage-related protein	NA
UHGV-0081278_27	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0081278_28	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0081278_28	UniRef90	UniRef90_UPI000235B4AB	phage tail family protein	NA
UHGV-0081278_28	eggNOG-mapper	1423816.BACQ01000026_gene932	Phage tail protein	NA
UHGV-0081278_28	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0081278_28	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0081278_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0081278_28	Structural annotation	PF05709, PF03388, TIGR01633, NF041449, NF033675, COG4722, COG3506	NA	NA
UHGV-0081278_29	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0081278_29	UniRef90	UniRef90_K8QL78	Prophage_tail domain-containing protein	NA
UHGV-0081278_29	eggNOG-mapper	1423816.BACQ01000026_gene931	cellulase activity	NA
UHGV-0081278_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081278_29	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0081278_29	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0081278_30	PHROG	phrog_4573	NA	unknown function
UHGV-0081278_30	UniRef90	UniRef90_A0A0E2BLW9	Putative phage protein	NA
UHGV-0081278_30	eggNOG-mapper	632112.C1KFN3_9CAUD	NA	NA
UHGV-0081278_30	Structural annotation	PF11192	NA	NA
UHGV-0081278_31	PHROG	phrog_4105	NA	unknown function
UHGV-0081278_31	eggNOG-mapper	543734.LCABL_13450	NA	NA
UHGV-0081278_32	PHROG	phrog_10091	holin	lysis
UHGV-0081278_32	UniRef90	UniRef90_C2JVK7	Holin, phage phi LC3 family	NA
UHGV-0081278_32	eggNOG-mapper	543734.LCABL_13460	Bacteriophage holin	NA
UHGV-0081278_32	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0081278_32	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0081278_32	COG	COG5546	NA	NA
UHGV-0081278_32	Structural annotation	PF04531, TIGR01598	NA	NA
UHGV-0081278_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0081278_33	PHROG	phrog_3393	endolysin	lysis
UHGV-0081278_33	UniRef90	UniRef90_C2JVK8	Glycosyl hydrolase family 25	NA
UHGV-0081278_33	eggNOG-mapper	39103.U5U408_9CAUD	peptidoglycan catabolic process	NA
UHGV-0081278_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0081278_34	UniRef90	UniRef90_A0A510WQI3	HTH cro/C1-type domain-containing protein	NA
UHGV-0081278_34	eggNOG-mapper	51369.O64369_9CAUD	sequence-specific DNA binding	NA
UHGV-0081278_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081278_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0081278_35	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0081278_35	UniRef90	UniRef90_UPI001E444DE5	Bro-N domain-containing protein	NA
UHGV-0081278_35	eggNOG-mapper	1122147.AUEH01000067_gene277	BRO family, N-terminal domain	NA
UHGV-0081278_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0081278_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0081278_36	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0081278_36	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0081278_36	UniRef90	UniRef90_B4XYR8	Antirepressor	NA
UHGV-0081278_36	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0081278_36	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0081278_36	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0081278_36	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0081278_36	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0081278_36	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-0081278_38	PHROG	phrog_6996	NA	unknown function
UHGV-0081278_39	PHROG	phrog_823	NA	unknown function
UHGV-0081278_39	UniRef90	UniRef90_UPI0007E1065E	NA	NA
UHGV-0081278_39	eggNOG-mapper	1231336.L248_1656	NA	NA
UHGV-0081278_39	Pfam	PF05595	NA	DUF771
UHGV-0081278_39	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0081278_40	PHROG	phrog_7103	NA	unknown function
UHGV-0081278_40	eggNOG-mapper	543734.LCABL_13030	NA	NA
UHGV-0081278_41	PHROG	phrog_19165	NA	unknown function
UHGV-0081278_42	PHROG	phrog_29333	NA	unknown function
UHGV-0081278_43	PHROG	phrog_5144	NA	unknown function
UHGV-0081278_43	UniRef90	UniRef90_A0A0P0I353	Transposase	NA
UHGV-0081278_44	PHROG	phrog_8306	NA	unknown function
UHGV-0081278_45	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0081278_45	UniRef90	UniRef90_A0A8A6BBK0	ERF family protein	NA
UHGV-0081278_45	eggNOG-mapper	663241.C9E2M9_9CAUD	ERF superfamily	NA
UHGV-0081278_45	Pfam	PF04404	ERF superfamily	ERF