UHGV-0081289

Genome information

Genome length 39,775 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081289
vOTU ID	vOTU-064653
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139598
BioSample	SAMEA2737877
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.5
Jumbo phage	No

Genome content
Genome length	39,775 bps
GC content	40.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	87.97%
Average CDS length	595.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081289_3	PHROG	phrog_31631	NA	unknown function
UHGV-0081289_5	eggNOG-mapper	411459.RUMOBE_01712	NA	NA
UHGV-0081289_5	Structural annotation	PF19087, NF033202	NA	NA
UHGV-0081289_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0081289_6	PHROG	phrog_435	endolysin	lysis
UHGV-0081289_6	UniRef90	UniRef90_A0A844DYE7	MurNAc-LAA domain-containing protein	NA
UHGV-0081289_6	eggNOG-mapper	1408437.JNJN01000039_gene391	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0081289_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0081289_6	Pfam	PF13946	NA	DUF4214
UHGV-0081289_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0081289_6	Structural annotation	PF01520, PF13946, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0081289_7	PHROG	phrog_443	holin	lysis
UHGV-0081289_7	UniRef90	UniRef90_UPI001D0979AE	holin	NA
UHGV-0081289_7	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0081289_7	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0081289_7	Structural annotation	PF16945	NA	NA
UHGV-0081289_8	PHROG	phrog_1863	NA	unknown function
UHGV-0081289_8	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0081289_9	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0081289_9	PHROG	phrog_16573	NA	unknown function
UHGV-0081289_9	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0081289_9	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0081289_11	PHROG	phrog_18110	NA	unknown function
UHGV-0081289_11	UniRef90	UniRef90_UPI001D08457A	phage tail protein	NA
UHGV-0081289_11	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0081289_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081289_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0081289_11	COG	COG4926	Phage-related protein	NA
UHGV-0081289_11	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0081289_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0081289_12	UniRef90	UniRef90_UPI001D05C493	phage tail family protein	NA
UHGV-0081289_12	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0081289_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0081289_12	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0081289_13	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0081289_13	UniRef90	UniRef90_A0A3R6TZG0	Phage tail tape measure protein	NA
UHGV-0081289_13	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0081289_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0081289_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0081289_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0081289_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0081289_14	PHROG	phrog_25901	NA	unknown function
UHGV-0081289_14	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-0081289_15	PHROG	phrog_13494	NA	unknown function
UHGV-0081289_15	eggNOG-mapper	411459.RUMOBE_01727	NA	NA
UHGV-0081289_15	Structural annotation	PF16462	NA	NA
UHGV-0081289_16	PHROG	phrog_88	major tail protein	tail
UHGV-0081289_16	UniRef90	UniRef90_A0A417VGN7	Major tail protein	NA
UHGV-0081289_16	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0081289_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0081289_16	COG	COG5492	NA	NA
UHGV-0081289_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0081289_17	PHROG	phrog_78	tail terminator	connector
UHGV-0081289_17	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0081289_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0081289_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0081289_18	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0081289_18	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0081289_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0081289_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0081289_19	UniRef90	UniRef90_A0A417VGC6	Phage head-tail adapter protein	NA
UHGV-0081289_19	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0081289_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0081289_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0081289_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0081289_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0081289_20	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-0081289_20	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0081289_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0081289_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0081289_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0081289_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0081289_21	UniRef90	UniRef90_A0A3R6YBY5	Phage major capsid protein	NA
UHGV-0081289_21	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081289_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0081289_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0081289_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081289_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0081289_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0081289_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0081289_22	UniRef90	UniRef90_A0A417VFW3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0081289_22	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-0081289_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0081289_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0081289_22	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0081289_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0081289_23	UniRef90	UniRef90_A0A3R6XLQ1	Phage portal protein	NA
UHGV-0081289_23	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0081289_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0081289_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0081289_23	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0081289_23	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0081289_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0081289_24	UniRef90	UniRef90_A0A417VH15	Terminase large subunit	NA
UHGV-0081289_24	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0081289_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0081289_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0081289_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0081289_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0081289_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0081289_25	UniRef90	UniRef90_A0A417VG35	Phage terminase small subunit P27 family	NA
UHGV-0081289_25	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0081289_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0081289_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0081289_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0081289_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0081289_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081289_26	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-0081289_26	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0081289_27	PHROG	phrog_1558	NA	unknown function
UHGV-0081289_27	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0081289_28	UniRef90	UniRef90_F7V7K9	Methyl-accepting chemotaxis protein	NA
UHGV-0081289_28	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0081289_28	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0081289_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0081289_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0081289_30	UniRef90	UniRef90_A0A417QWS3	Single-stranded DNA-binding protein	NA
UHGV-0081289_30	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-0081289_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0081289_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0081289_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0081289_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0081289_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0081289_31	PHROG	phrog_1315	NA	unknown function
UHGV-0081289_31	Structural annotation	TIGR00310	NA	NA
UHGV-0081289_32	PHROG	phrog_25456	NA	unknown function
UHGV-0081289_33	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081289_33	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0081289_33	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0081289_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0081289_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0081289_33	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0081289_34	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0081289_34	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0081289_35	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0081289_35	PHROG	phrog_15982	NA	unknown function
UHGV-0081289_35	UniRef90	UniRef90_A0A494WRE3	Nucleoid occlusion protein	NA
UHGV-0081289_35	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0081289_35	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0081289_35	Pfam	PF12961	NA	DUF3850
UHGV-0081289_35	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0081289_35	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0081289_37	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0081289_37	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0081289_37	UniRef90	UniRef90_A0A3R6XV13	ParA family protein	NA
UHGV-0081289_37	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0081289_37	Pfam	PF13614	AAA domain	AAA_31
UHGV-0081289_37	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0081289_37	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0081289_38	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0081289_40	PHROG	phrog_824	NA	unknown function
UHGV-0081289_40	UniRef90	UniRef90_A0A414DFB5	VRR-NUC domain-containing protein	NA
UHGV-0081289_40	eggNOG-mapper	411470.RUMGNA_00207	VRR_NUC	NA
UHGV-0081289_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0081289_41	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0081289_41	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0081289_41	Structural annotation	PF21578	NA	NA
UHGV-0081289_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0081289_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081289_43	UniRef90	UniRef90_A0A1C5W301	HTH-type transcriptional regulator immR	NA
UHGV-0081289_43	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0081289_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081289_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0081289_43	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0081289_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081289_44	UniRef90	UniRef90_A0A7X5EEB6	XRE family transcriptional regulator	NA
UHGV-0081289_44	eggNOG-mapper	397290.C810_01482	Helix-turn-helix XRE-family like proteins	NA
UHGV-0081289_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0081289_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081289_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0081289_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0081289_45	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0081289_45	UniRef90	UniRef90_A0A4S2AEU6	NA	NA
UHGV-0081289_45	Pfam	PF14359	NA	DUF4406
UHGV-0081289_45	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0081289_46	Pfam	PF18941	NA	DUF5688
UHGV-0081289_50	Pfam	PF18572	Trehalose-6-phosphate phosphatase N-terminal helical bundle domain	T6PP_N
UHGV-0081289_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0081289_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081289_55	UniRef90	UniRef90_A0A417QX81	XRE family transcriptional regulator	NA
UHGV-0081289_55	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0081289_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081289_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081289_55	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0081289_56	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0081289_56	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0081289_56	UniRef90	UniRef90_UPI000F0B7031	3'-5' exoribonuclease	NA
UHGV-0081289_56	eggNOG-mapper	1243664.CAVL020000010_gene4579	3' exoribonuclease, RNase T-like	NA
UHGV-0081289_56	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0081289_56	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0081289_56	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0081289_56	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0081289_56	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0081289_57	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0081289_57	PHROG	phrog_95	integrase	integration and excision
UHGV-0081289_57	UniRef90	UniRef90_A0A3R6WU62	Site-specific recombinase	NA
UHGV-0081289_57	eggNOG-mapper	411470.RUMGNA_00187	Resolvase, N terminal domain	NA
UHGV-0081289_57	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0081289_57	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0081289_57	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0081289_57	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0081289_58	KOfam	K02003	ABC.CD.A; putative ABC transport system ATP-binding protein	NA
UHGV-0081289_58	PHROG	phrog_293	ABC transporter	moron, auxiliary metabolic gene and host takeover
UHGV-0081289_58	UniRef90	UniRef90_R7HDG3	ABC transporter ATP-binding protein	NA
UHGV-0081289_58	eggNOG-mapper	411463.EUBVEN_01417	ABC-type antimicrobial peptide transport system, ATPase component	NA
UHGV-0081289_58	Pfam	PF00005	ABC transporter	ABC_tran
UHGV-0081289_58	COG	COG1136	ABC-type lipoprotein export system, ATPase component	NA
UHGV-0081289_58	Structural annotation	PF00005, MF_01005, NF008639, COG1136	NA	NA