UHGV-0081334

Genome information

vOTU vOTU-019982

Genome length 34,271 bps

CDS count 49

Completeness 80.27% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081334
vOTU ID	vOTU-019982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_142104
BioSample	SAMEA2737696
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.27% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.35
Jumbo phage	No

Genome content
Genome length	34,271 bps
GC content	47.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.52%
Average CDS length	664.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081334_3	PHROG	phrog_16164	NA	unknown function
UHGV-0081334_3	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0081334_3	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0081334_3	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0081334_4	PHROG	phrog_19111	NA	unknown function
UHGV-0081334_4	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0081334_4	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0081334_6	eggNOG-mapper	1298920.KI911353_gene4835	NA	NA
UHGV-0081334_7	PHROG	phrog_35834	NA	unknown function
UHGV-0081334_7	UniRef90	UniRef90_A0A396Q326	Fibronectin type-III domain-containing protein	NA
UHGV-0081334_7	eggNOG-mapper	1304866.K413DRAFT_4766	NA	NA
UHGV-0081334_7	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0081334_7	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-0081334_8	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-0081334_9	PHROG	phrog_521	tail protein	tail
UHGV-0081334_9	UniRef90	UniRef90_A0A3R6U2T5	NA	NA
UHGV-0081334_9	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-0081334_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0081334_9	COG	COG3778	NA	NA
UHGV-0081334_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0081334_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0081334_10	UniRef90	UniRef90_A0A3R6XTC2	Baseplate J protein	NA
UHGV-0081334_10	eggNOG-mapper	610130.Closa_1409	Baseplate J-like protein	NA
UHGV-0081334_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0081334_10	COG	COG3299	NA	NA
UHGV-0081334_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0081334_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0081334_11	UniRef90	UniRef90_A0A417WCU8	NA	NA
UHGV-0081334_11	eggNOG-mapper	610130.Closa_1408	NA	NA
UHGV-0081334_11	Pfam	PF10934	NA	DUF2634
UHGV-0081334_11	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0081334_11	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0081334_12	UniRef90	UniRef90_A0A417WCS3	DNA helicase	NA
UHGV-0081334_12	eggNOG-mapper	1121335.Clst_0404	NA	NA
UHGV-0081334_12	Structural annotation	PF10844, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0081334_13	PHROG	phrog_400	tail protein	tail
UHGV-0081334_13	UniRef90	UniRef90_A0A174R8Z2	NA	NA
UHGV-0081334_13	eggNOG-mapper	610130.Closa_1406	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0081334_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0081334_13	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0081334_14	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0081334_14	PHROG	phrog_380	endolysin	lysis
UHGV-0081334_14	UniRef90	UniRef90_A0A3D5L8C3	Peptidoglycan-binding protein	NA
UHGV-0081334_14	eggNOG-mapper	610130.Closa_1405	LysM domain	NA
UHGV-0081334_14	Pfam	PF01476	LysM domain	LysM
UHGV-0081334_14	COG	COG1388	LysM repeat	NA
UHGV-0081334_14	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0081334_15	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0081334_15	UniRef90	UniRef90_A0A417U110	Phage tail protein	NA
UHGV-0081334_15	eggNOG-mapper	610130.Closa_1404	tape measure	NA
UHGV-0081334_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0081334_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0081334_15	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0081334_15	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0081334_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0081334_16	UniRef90	UniRef90_A0A417U1E3	Phage portal protein	NA
UHGV-0081334_16	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0081334_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0081334_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0081334_17	PHROG	phrog_365	tail protein	tail
UHGV-0081334_17	UniRef90	UniRef90_A0A417U0W1	Phage portal protein	NA
UHGV-0081334_17	eggNOG-mapper	1121335.Clst_0398	Phage tail tube protein	NA
UHGV-0081334_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0081334_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0081334_18	PHROG	phrog_279	tail sheath	tail
UHGV-0081334_18	UniRef90	UniRef90_A0A417WCM8	Phage tail sheath protein	NA
UHGV-0081334_18	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA
UHGV-0081334_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0081334_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0081334_18	Structural annotation	PF04984, PF17482, COG4386	NA	NA
UHGV-0081334_19	PHROG	phrog_525	NA	unknown function
UHGV-0081334_19	eggNOG-mapper	1121335.Clst_0396	NA	NA
UHGV-0081334_19	Pfam	PF20765	NA	DUF6838
UHGV-0081334_19	Structural annotation	PF20765	NA	NA
UHGV-0081334_20	UniRef90	UniRef90_A0A3R7C409	HK97 gp10 family phage protein	NA
UHGV-0081334_20	eggNOG-mapper	610130.Closa_1398	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0081334_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0081334_20	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0081334_21	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0081334_21	eggNOG-mapper	1121335.Clst_0394	NA	NA
UHGV-0081334_21	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0081334_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0081334_22	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0081334_22	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0081334_22	Structural annotation	PF05135	NA	NA
UHGV-0081334_23	PHROG	phrog_247	major head protein	head and packaging
UHGV-0081334_23	UniRef90	UniRef90_A0A3R6WDT3	Coat protein	NA
UHGV-0081334_23	eggNOG-mapper	1567014.A0A0A7RVZ1_9VIRU	NA	NA
UHGV-0081334_23	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0081334_23	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0081334_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0081334_24	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0081334_24	eggNOG-mapper	1567014.A0A0A7S0J5_9VIRU	Phage minor structural protein GP20	NA
UHGV-0081334_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0081334_24	Structural annotation	PF06810	NA	NA
UHGV-0081334_25	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0081334_26	PHROG	phrog_8857	NA	unknown function
UHGV-0081334_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0081334_27	UniRef90	UniRef90_A0A3R6UZX6	Phage_Mu_F domain-containing protein	NA
UHGV-0081334_27	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0081334_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0081334_27	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0081334_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0081334_27	COG	COG2369	NA	NA
UHGV-0081334_27	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0081334_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0081334_28	UniRef90	UniRef90_A0A417UH01	Phage portal protein	NA
UHGV-0081334_28	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0081334_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0081334_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0081334_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081334_29	PHROG	phrog_10250	NA	unknown function
UHGV-0081334_29	UniRef90	UniRef90_A0A417WCN0	PBSX family phage terminase large subunit	NA
UHGV-0081334_29	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0081334_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0081334_29	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0081334_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0081334_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081334_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0081334_30	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0081334_30	UniRef90	UniRef90_A0A3D5L8R6	Terminase	NA
UHGV-0081334_30	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0081334_30	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0081334_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0081334_30	COG	COG5484	NA	NA
UHGV-0081334_30	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0081334_31	UniRef90	UniRef90_UPI00131E8D48	NA	NA
UHGV-0081334_31	eggNOG-mapper	693746.OBV_43160	NA	NA
UHGV-0081334_31	Pfam	PF10987	NA	DUF2806
UHGV-0081334_32	PHROG	phrog_5018	NA	unknown function
UHGV-0081334_32	UniRef90	UniRef90_UPI00115926C0	group I intron-associated PD-(D/E)XK endonuclease	NA
UHGV-0081334_32	eggNOG-mapper	1197130.BAFM01000012_gene2160	PD-(D/E)XK endonuclease	NA
UHGV-0081334_32	Pfam	PF11645	PD-(D/E)XK endonuclease	PDDEXK_5
UHGV-0081334_32	Structural annotation	PF11645, MF_01490, NF011271, COG4815	NA	NA
UHGV-0081334_35	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0081334_35	UniRef90	UniRef90_A0A396Q4H5	Bro-N domain-containing protein	NA
UHGV-0081334_35	eggNOG-mapper	1151292.QEW_2476	BRO family, N-terminal domain	NA
UHGV-0081334_35	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0081334_35	COG	COG3617	Prophage antirepressor	NA
UHGV-0081334_35	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0081334_36	UniRef90	UniRef90_A0A7X5DAV1	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0081334_36	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-0081334_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0081334_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081334_37	UniRef90	UniRef90_A0A3A8W290	XRE family transcriptional regulator	NA
UHGV-0081334_37	eggNOG-mapper	697303.Thewi_2448	Helix-turn-helix XRE-family like proteins	NA
UHGV-0081334_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0081334_37	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0081334_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081334_38	PHROG	phrog_11237	NA	unknown function
UHGV-0081334_38	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0081334_39	PHROG	phrog_15077	NA	unknown function
UHGV-0081334_39	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0081334_40	UniRef90	UniRef90_A0A3R6K7W7	Sigma70_r4_2 domain-containing protein	NA
UHGV-0081334_40	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0081334_40	Structural annotation	PF13384, PF17516, NF001074, COG2771	NA	NA
UHGV-0081334_41	PHROG	phrog_15768	NA	unknown function
UHGV-0081334_41	UniRef90	UniRef90_A0A6N7WLG6	NA	NA
UHGV-0081334_41	eggNOG-mapper	693979.Bache_0304	NA	NA
UHGV-0081334_41	AcrCatalog	cluster_38323	NA	NA
UHGV-0081334_41	Pfam	PF19808	NA	DUF6291
UHGV-0081334_41	Structural annotation	PF19808	NA	NA
UHGV-0081334_42	PHROG	phrog_1029	NA	unknown function
UHGV-0081334_42	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0081334_42	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0081334_42	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0081334_43	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0081334_43	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0081334_43	eggNOG-mapper	358681.BBR47_35700	NA	NA
UHGV-0081334_44	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0081334_44	UniRef90	UniRef90_A0A373CW44	Phage recombination protein Bet	NA
UHGV-0081334_44	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-0081334_44	Pfam	PF03837	RecT family	RecT
UHGV-0081334_44	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0081334_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0081334_44	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0081334_45	PHROG	phrog_674	NA	unknown function
UHGV-0081334_45	UniRef90	UniRef90_UPI001177B8E6	NA	NA
UHGV-0081334_45	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0081334_45	Pfam	PF07083	NA	DUF1351
UHGV-0081334_45	Structural annotation	PF07083	NA	NA
UHGV-0081334_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081334_46	UniRef90	UniRef90_A0A417WEV5	Recombinase	NA
UHGV-0081334_46	eggNOG-mapper	742740.HMPREF9474_03486	YqaJ viral recombinase family	NA
UHGV-0081334_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0081334_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0081334_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0081334_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0081334_47	Structural annotation	PF09871, MF_00085, TIGR00739, COG0231	NA	NA