UHGV-0081489

Genome information

Genome length 15,870 bps

CDS count 17

Completeness 52.83% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081489
vOTU ID	vOTU-021274
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_143684
BioSample	SAMEA2737875
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	52.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.95
Jumbo phage	No

Genome content
Genome length	15,870 bps
GC content	51.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	92.21%
Average CDS length	866.65 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081489_2	Structural annotation	PF05096, MF_01605, TIGR03866, COG3391	NA	NA
UHGV-0081489_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0081489_6	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-0081489_6	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0081489_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0081489_6	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0081489_7	PHROG	phrog_2248	tail protein	tail
UHGV-0081489_7	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0081489_7	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0081489_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0081489_8	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-0081489_8	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0081489_8	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0081489_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0081489_10	UniRef90	UniRef90_A0A843HJW2	Phage DNA encapsidation protein	NA
UHGV-0081489_10	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0081489_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0081489_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0081489_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0081489_11	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-0081489_13	Structural annotation	PF17427	NA	NA
UHGV-0081489_14	Structural annotation	PF17548	NA	NA
UHGV-0081489_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0081489_15	PHROG	phrog_291	endolysin	lysis
UHGV-0081489_15	UniRef90	UniRef90_UPI00195EE7EA	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0081489_15	eggNOG-mapper	1437608.BBIA_1423	Glycosyl hydrolases family 25	NA
UHGV-0081489_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0081489_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0081489_15	Structural annotation	PF01183, NF003645, COG3757	NA	NA