UHGV-0081593

Genome information

Genome length 37,072 bps

CDS count 53

Completeness 96.83% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081593
vOTU ID	vOTU-010427
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146221
BioSample	SAMEA2737852
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.83% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.19
Jumbo phage	No

Genome content
Genome length	37,072 bps
GC content	46.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.43%
Average CDS length	658.25 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081593_1	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0081593_1	UniRef90	UniRef90_K1TV48	NA	NA
UHGV-0081593_1	eggNOG-mapper	290402.Cbei_1623	NA	NA
UHGV-0081593_1	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0081593_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0081593_1	Structural annotation	PF14297, TIGR01714, COG3756	NA	NA
UHGV-0081593_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0081593_2	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0081593_2	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0081593_2	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0081593_2	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0081593_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0081593_2	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0081593_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0081593_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0081593_3	UniRef90	UniRef90_UPI001C026F6F	recombinase RecT	NA
UHGV-0081593_3	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0081593_3	Pfam	PF03837	RecT family	RecT
UHGV-0081593_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0081593_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0081593_3	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0081593_4	PHROG	phrog_674	NA	unknown function
UHGV-0081593_4	UniRef90	UniRef90_UPI001C0153C8	NA	NA
UHGV-0081593_4	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0081593_4	Pfam	PF07083	NA	DUF1351
UHGV-0081593_4	Structural annotation	PF07083	NA	NA
UHGV-0081593_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081593_5	UniRef90	UniRef90_UPI001C0120DF	YqaJ viral recombinase family protein	NA
UHGV-0081593_5	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0081593_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0081593_5	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0081593_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0081593_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0081593_6	UniRef90	UniRef90_UPI00156FCC15	helix-turn-helix domain-containing protein	NA
UHGV-0081593_9	Structural annotation	PF19128	NA	NA
UHGV-0081593_10	PHROG	phrog_3777	NA	unknown function
UHGV-0081593_10	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0081593_10	Structural annotation	PF18441	NA	NA
UHGV-0081593_12	PHROG	phrog_6058	NA	unknown function
UHGV-0081593_12	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-0081593_12	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0081593_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081593_12	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0081593_13	PHROG	phrog_585	NA	unknown function
UHGV-0081593_13	UniRef90	UniRef90_UPI001654CF6A	NA	NA
UHGV-0081593_13	eggNOG-mapper	1235798.C817_04760	NA	NA
UHGV-0081593_13	Pfam	PF10711	NA	DUF2513
UHGV-0081593_13	Structural annotation	PF10711, TIGR04176, COG5045	NA	NA
UHGV-0081593_15	UniRef90	UniRef90_UPI001EE0CE96	helix-turn-helix domain-containing protein	NA
UHGV-0081593_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0081593_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0081593_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081593_16	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0081593_16	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0081593_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0081593_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081593_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081593_16	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0081593_17	PHROG	phrog_87	metallo-protease	other
UHGV-0081593_17	UniRef90	UniRef90_UPI0015D3F2DD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0081593_17	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0081593_17	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0081593_17	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0081593_17	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0081593_19	KOfam	K14059	int; integrase	NA
UHGV-0081593_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0081593_19	UniRef90	UniRef90_A0A1C5QPZ2	Integrase	NA
UHGV-0081593_19	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0081593_19	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0081593_19	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0081593_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0081593_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0081593_19	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0081593_20	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0081593_20	PHROG	phrog_1794	amidase	lysis
UHGV-0081593_20	UniRef90	UniRef90_A0A1C5QWL7	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-0081593_20	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0081593_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0081593_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0081593_20	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0081593_21	PHROG	phrog_199	holin	lysis
UHGV-0081593_21	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0081593_21	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0081593_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0081593_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0081593_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0081593_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0081593_23	eggNOG-mapper	1408428.JNJP01000079_gene3365	Phage tail-collar fibre protein	NA
UHGV-0081593_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0081593_24	PHROG	phrog_38190	NA	unknown function
UHGV-0081593_24	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0081593_24	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0081593_24	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0081593_25	PHROG	phrog_3558	tail protein	tail
UHGV-0081593_25	UniRef90	UniRef90_A0A1C5QW63	Phage minor structural protein, N-terminal region	NA
UHGV-0081593_25	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0081593_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081593_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0081593_25	COG	COG4926	Phage-related protein	NA
UHGV-0081593_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0081593_26	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0081593_26	UniRef90	UniRef90_A0A1C5QVY7	Phage-related protein	NA
UHGV-0081593_26	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0081593_26	COG	COG4722	Phage-related protein YomH	NA
UHGV-0081593_26	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0081593_27	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0081593_27	UniRef90	UniRef90_A0A1C5QW36	Phage-related protein	NA
UHGV-0081593_27	eggNOG-mapper	693746.OBV_25080	Phage-related minor tail protein	NA
UHGV-0081593_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0081593_27	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0081593_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0081593_27	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0081593_28	PHROG	phrog_706	NA	unknown function
UHGV-0081593_28	UniRef90	UniRef90_A0A1C5QVP1	Bacteriophage Gp15 protein	NA
UHGV-0081593_28	eggNOG-mapper	1235792.C808_05375	COG NOG24969 non supervised orthologous group	NA
UHGV-0081593_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0081593_28	Structural annotation	PF06854	NA	NA
UHGV-0081593_29	PHROG	phrog_3099	NA	unknown function
UHGV-0081593_29	eggNOG-mapper	1235792.C808_05373	NA	NA
UHGV-0081593_29	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0081593_30	PHROG	phrog_3266	tail completion	connector
UHGV-0081593_30	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0081593_30	Structural annotation	PF12691	NA	NA
UHGV-0081593_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0081593_31	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0081593_31	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0081593_32	PHROG	phrog_3366	NA	unknown function
UHGV-0081593_32	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0081593_32	Pfam	PF20536	NA	DUF6751
UHGV-0081593_32	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0081593_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0081593_33	eggNOG-mapper	1235792.C808_05369	NA	NA
UHGV-0081593_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0081593_34	UniRef90	UniRef90_A0A1C5QUP5	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081593_34	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0081593_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0081593_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0081593_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081593_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0081593_35	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0081593_35	eggNOG-mapper	1235792.C808_05367	NA	NA
UHGV-0081593_35	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0081593_36	KOfam	K07584	NA	NA
UHGV-0081593_36	PHROG	phrog_4478	peptidase	other
UHGV-0081593_36	UniRef90	UniRef90_A0A1C5QUN2	Predicted ribosomal protein	NA
UHGV-0081593_36	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-0081593_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0081593_36	COG	COG2868	NA	NA
UHGV-0081593_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0081593_37	PHROG	phrog_13199	NA	unknown function
UHGV-0081593_37	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0081593_38	PHROG	phrog_872	NA	unknown function
UHGV-0081593_38	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0081593_38	eggNOG-mapper	1123288.SOV_4c02650	NA	NA
UHGV-0081593_38	Pfam	PF11195	NA	DUF2829
UHGV-0081593_38	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0081593_38	Structural annotation	PF11195	NA	NA
UHGV-0081593_39	PHROG	phrog_21498	NA	unknown function
UHGV-0081593_39	eggNOG-mapper	78346.BRUM_0376	DNA binding	NA
UHGV-0081593_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0081593_39	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0081593_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0081593_41	UniRef90	UniRef90_UPI001917634A	minor capsid protein	NA
UHGV-0081593_41	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0081593_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0081593_41	COG	COG2369	NA	NA
UHGV-0081593_41	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0081593_42	PHROG	phrog_533	portal protein	head and packaging
UHGV-0081593_42	UniRef90	UniRef90_A0A1C5QU10	Phage portal protein, putative, A118 family	NA
UHGV-0081593_42	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0081593_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0081593_42	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0081593_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081593_43	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0081593_43	UniRef90	UniRef90_A0A1C5QTK5	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-0081593_43	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0081593_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0081593_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0081593_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081593_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0081593_44	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0081593_44	UniRef90	UniRef90_UPI00189AF2D9	phage terminase small subunit	NA
UHGV-0081593_44	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0081593_44	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0081593_44	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0081593_44	COG	COG5484	NA	NA
UHGV-0081593_44	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0081593_45	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0081593_45	UniRef90	UniRef90_A0A3A9HG24	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0081593_45	eggNOG-mapper	469618.FVAG_00790	NA	NA
UHGV-0081593_45	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0081593_45	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0081593_48	PHROG	phrog_15077	NA	unknown function
UHGV-0081593_48	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0081593_50	UniRef90	UniRef90_R7NA70	Putative long-chain-fatty-acid-CoA ligase	NA
UHGV-0081593_50	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-0081593_51	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0081593_51	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0081593_51	UniRef90	UniRef90_UPI001C01D594	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0081593_51	eggNOG-mapper	742765.HMPREF9457_03403	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0081593_51	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0081593_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0081593_51	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0081593_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0081593_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0081593_52	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0081593_52	eggNOG-mapper	478749.BRYFOR_09630	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0081593_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0081593_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0081593_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0081593_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0081593_52	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0081593_53	PHROG	phrog_9300	NA	unknown function