UHGV-0081616

Genome information

Genome length 19,952 bps

CDS count 26

Completeness 54.25% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081616
vOTU ID	vOTU-029980
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_143315
BioSample	SAMEA2737818
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.08
Jumbo phage	No

Genome content
Genome length	19,952 bps
GC content	59.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	95.13%
Average CDS length	732.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081616_3	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0081616_3	Structural annotation	PF14600	NA	NA
UHGV-0081616_5	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0081616_5	UniRef90	UniRef90_UPI000834AF98	NA	NA
UHGV-0081616_5	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0081616_5	Pfam	PF19789	NA	DUF6273
UHGV-0081616_5	Structural annotation	PF19789	NA	NA
UHGV-0081616_6	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0081616_7	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0081616_7	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0081616_8	Structural annotation	PF10651	NA	NA
UHGV-0081616_10	Structural annotation	PF18614, MF_00085, NF003076, COG0231	NA	NA
UHGV-0081616_11	PHROG	phrog_26795	NA	unknown function
UHGV-0081616_11	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0081616_11	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0081616_12	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0081616_12	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0081616_12	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0081616_12	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0081616_13	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0081616_13	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0081616_13	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0081616_13	COG	COG5283	Phage-related tail protein	NA
UHGV-0081616_13	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0081616_14	PHROG	phrog_2115	tail protein	tail
UHGV-0081616_14	eggNOG-mapper	994573.T472_0211300	NA	NA
UHGV-0081616_14	Structural annotation	PF11836	NA	NA
UHGV-0081616_15	PHROG	phrog_88	major tail protein	tail
UHGV-0081616_15	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0081616_15	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0081616_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0081616_15	COG	COG5492	NA	NA
UHGV-0081616_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0081616_16	Structural annotation	TIGR01725	NA	NA
UHGV-0081616_17	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0081616_17	Structural annotation	PF05657	NA	NA
UHGV-0081616_18	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0081616_18	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0081616_18	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0081616_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0081616_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0081616_18	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0081616_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0081616_19	PHROG	phrog_5223	neck protein	connector
UHGV-0081616_19	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0081616_19	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0081616_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0081616_20	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0081616_20	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0081616_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0081616_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0081616_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081616_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0081616_21	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0081616_21	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0081616_21	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0081616_21	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0081616_21	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0081616_21	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0081616_21	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0081616_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0081616_22	UniRef90	UniRef90_C4GAS6	Putative phage portal protein, HK97 family	NA
UHGV-0081616_22	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0081616_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0081616_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0081616_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0081616_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0081616_23	UniRef90	UniRef90_A0A1Y3W5R1	Terminase	NA
UHGV-0081616_23	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0081616_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0081616_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0081616_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0081616_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0081616_24	PHROG	phrog_1066	NA	unknown function
UHGV-0081616_24	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0081616_24	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0081616_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081616_25	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0081616_25	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0081616_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0081616_26	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0081616_26	Structural annotation	PF06530, TIGR01636	NA	NA