UHGV-0081687

Genome information

Genome length 44,335 bps

CDS count 70

Completeness 100.00% (complete)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081687
vOTU ID	vOTU-051554
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167083
BioSample	SAMEA3136685
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.43
Jumbo phage	No

Genome content
Genome length	44,335 bps
GC content	40.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	89.13%
Average CDS length	567.86 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081687_1	PHROG	phrog_7964	NA	unknown function
UHGV-0081687_1	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0081687_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0081687_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0081687_1	Structural annotation	NF040481	NA	NA
UHGV-0081687_6	Structural annotation	NF011879	NA	NA
UHGV-0081687_7	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0081687_8	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0081687_8	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0081687_8	eggNOG-mapper	397290.C810_05165	AAA domain	NA
UHGV-0081687_8	Pfam	PF13479	AAA domain	AAA_24
UHGV-0081687_8	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0081687_9	PHROG	phrog_18107	NA	unknown function
UHGV-0081687_9	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0081687_9	Structural annotation	PF05037	NA	NA
UHGV-0081687_10	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0081687_10	UniRef90	UniRef90_R9KEE1	ERCC4 domain-containing protein	NA
UHGV-0081687_10	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0081687_10	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0081687_10	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0081687_11	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0081687_11	PHROG	phrog_11992	NA	unknown function
UHGV-0081687_11	UniRef90	UniRef90_A0A3A6GSV7	DNA primase	NA
UHGV-0081687_11	eggNOG-mapper	411460.RUMTOR_02069	CHC2 zinc finger	NA
UHGV-0081687_11	PADLOC	drt-UG29	DRT	DRT
UHGV-0081687_11	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0081687_11	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0081687_11	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0081687_12	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0081687_12	UniRef90	UniRef90_A0A3A6GQS5	NA	NA
UHGV-0081687_12	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0081687_12	Pfam	PF06048	NA	DUF927
UHGV-0081687_12	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0081687_12	COG	COG5519	NA	NA
UHGV-0081687_12	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0081687_13	KOfam	K15255	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	NA
UHGV-0081687_13	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-0081687_13	UniRef90	UniRef90_A0A2V2D011	AAA domain-containing protein	NA
UHGV-0081687_13	eggNOG-mapper	1504823.CCMM01000005_gene215	Caulimovirus viroplasmin	NA
UHGV-0081687_13	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0081687_13	Pfam	PF05970	PIF1-like helicase	PIF1
UHGV-0081687_13	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0081687_13	Structural annotation	PF05970, PF16277, MF_03176, TIGR01448, COG0507	NA	NA
UHGV-0081687_15	PHROG	phrog_17690	NA	unknown function
UHGV-0081687_15	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0081687_17	UniRef90	UniRef90_A0A373P4I4	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0081687_17	Pfam	PF12840	Helix-turn-helix domain	HTH_20
UHGV-0081687_17	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0081687_18	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0081687_18	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0081687_18	UniRef90	UniRef90_A0A317UED7	Restriction alleviation protein, Lar family	NA
UHGV-0081687_18	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0081687_18	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0081687_18	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0081687_18	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0081687_19	Structural annotation	PF17888	NA	NA
UHGV-0081687_20	UniRef90	UniRef90_A0A395XB56	NA	NA
UHGV-0081687_20	Pfam	PF04448	NA	DUF551
UHGV-0081687_22	PHROG	phrog_20593	NA	unknown function
UHGV-0081687_23	PHROG	phrog_8684	NA	unknown function
UHGV-0081687_23	UniRef90	UniRef90_UPI000E48CB3D	YopX family protein	NA
UHGV-0081687_23	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0081687_23	Pfam	PF09643	YopX protein	YopX
UHGV-0081687_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0081687_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0081687_26	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0081687_26	Structural annotation	PF09038	NA	NA
UHGV-0081687_27	PHROG	phrog_1455	NA	unknown function
UHGV-0081687_27	eggNOG-mapper	1280692.AUJL01000009_gene2996	NA	NA
UHGV-0081687_27	Pfam	PF21793	NA	DUF6877
UHGV-0081687_27	Structural annotation	PF21793	NA	NA
UHGV-0081687_28	PHROG	phrog_2776	NA	unknown function
UHGV-0081687_28	eggNOG-mapper	411490.ANACAC_00794	NA	NA
UHGV-0081687_28	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0081687_30	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0081687_30	AcrCatalog	cluster_11670	NA	NA
UHGV-0081687_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081687_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0081687_32	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0081687_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0081687_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0081687_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0081687_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0081687_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0081687_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081687_32	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0081687_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0081687_34	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0081687_34	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0081687_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0081687_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0081687_35	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0081687_35	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0081687_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0081687_35	COG	COG2369	NA	NA
UHGV-0081687_35	Structural annotation	PF06152	NA	NA
UHGV-0081687_36	PHROG	phrog_3754	NA	unknown function
UHGV-0081687_36	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0081687_37	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0081687_37	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0081687_38	PHROG	phrog_21718	NA	unknown function
UHGV-0081687_38	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0081687_39	PHROG	phrog_22984	NA	unknown function
UHGV-0081687_40	PHROG	phrog_16490	NA	unknown function
UHGV-0081687_40	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0081687_41	PHROG	phrog_20016	NA	unknown function
UHGV-0081687_41	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0081687_41	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0081687_41	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0081687_42	PHROG	phrog_28802	NA	unknown function
UHGV-0081687_42	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0081687_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0081687_43	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0081687_43	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0081687_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0081687_43	Structural annotation	PF06810	NA	NA
UHGV-0081687_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0081687_44	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0081687_44	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0081687_44	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0081687_44	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0081687_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0081687_45	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0081687_47	PHROG	phrog_774	NA	unknown function
UHGV-0081687_47	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0081687_48	PHROG	phrog_18218	NA	unknown function
UHGV-0081687_48	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0081687_48	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0081687_48	Structural annotation	PF06946	NA	NA
UHGV-0081687_49	PHROG	phrog_3366	NA	unknown function
UHGV-0081687_49	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0081687_49	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0081687_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0081687_50	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0081687_50	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0081687_50	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0081687_50	Structural annotation	PF11114	NA	NA
UHGV-0081687_51	PHROG	phrog_3266	tail completion	connector
UHGV-0081687_51	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0081687_51	Structural annotation	PF12691	NA	NA
UHGV-0081687_52	PHROG	phrog_3099	NA	unknown function
UHGV-0081687_52	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0081687_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0081687_53	PHROG	phrog_11299	NA	unknown function
UHGV-0081687_53	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0081687_53	Structural annotation	PF10666	NA	NA
UHGV-0081687_54	PHROG	phrog_706	NA	unknown function
UHGV-0081687_54	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0081687_54	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0081687_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0081687_54	Structural annotation	PF06854	NA	NA
UHGV-0081687_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0081687_55	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0081687_55	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0081687_55	COG	COG1511	NA	NA
UHGV-0081687_55	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0081687_56	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0081687_57	PHROG	phrog_6616	tail protein	tail
UHGV-0081687_57	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0081687_57	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0081687_57	COG	COG4926	Phage-related protein	NA
UHGV-0081687_57	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0081687_58	eggNOG-mapper	1469948.JPNB01000002_gene3859	translation initiation factor activity	NA
UHGV-0081687_58	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0081687_59	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0081687_61	PHROG	phrog_9589	endolysin	lysis
UHGV-0081687_61	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0081687_61	eggNOG-mapper	476272.RUMHYD_01851	Putative peptidoglycan binding domain	NA
UHGV-0081687_61	Pfam	PF05257	CHAP domain	CHAP
UHGV-0081687_61	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0081687_61	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0081687_61	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0081687_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0081687_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0081687_62	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0081687_62	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0081687_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0081687_62	Pfam	PF07508	Recombinase	Recombinase
UHGV-0081687_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0081687_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0081687_62	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0081687_63	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0081687_63	UniRef90	UniRef90_A0A839JXV0	Ig domain-containing protein	NA
UHGV-0081687_63	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-0081687_63	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0081687_63	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0081687_63	Structural annotation	PF02368, PF11906, NF005261	NA	NA
UHGV-0081687_66	UniRef90	UniRef90_A0A4Q5ERT3	XRE family transcriptional regulator	NA
UHGV-0081687_66	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-0081687_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081687_66	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0081687_70	PHROG	phrog_20149	NA	unknown function
UHGV-0081687_70	UniRef90	UniRef90_A0A085HIF4	Gp229 family phage protein (Fragment)	NA
UHGV-0081687_70	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0081687_70	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA