UHGV-0081704

Genome information

Genome length 30,085 bps

CDS count 44

Completeness 78.74% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081704
vOTU ID	vOTU-035060
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_153655
BioSample	SAMEA2784509
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.74% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.86
Jumbo phage	No

Genome content
Genome length	30,085 bps
GC content	53.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.49%
Average CDS length	650.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081704_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0081704_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0081704_2	UniRef90	UniRef90_UPI001D0096C0	XRE family transcriptional regulator	NA
UHGV-0081704_2	eggNOG-mapper	1507.HMPREF0262_00168	Peptidase S24-like	NA
UHGV-0081704_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081704_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0081704_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081704_2	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0081704_5	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0081704_5	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0081704_5	UniRef90	UniRef90_UPI001D007243	helix-turn-helix domain-containing protein	NA
UHGV-0081704_5	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0081704_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0081704_5	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0081704_11	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0081704_11	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0081704_11	UniRef90	UniRef90_R7GUS0	NA	NA
UHGV-0081704_11	eggNOG-mapper	909297.G8CLD3_9CAUD	NA	NA
UHGV-0081704_11	Pfam	PF12684	NA	DUF3799
UHGV-0081704_11	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0081704_12	PHROG	phrog_3657	NA	unknown function
UHGV-0081704_12	eggNOG-mapper	1071073.KI530540_gene3354	NA	NA
UHGV-0081704_12	Structural annotation	PF04404	NA	NA
UHGV-0081704_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0081704_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0081704_13	UniRef90	UniRef90_R7GSV4	Single-stranded DNA-binding protein	NA
UHGV-0081704_13	eggNOG-mapper	1313301.AUGC01000001_gene1421	single-stranded DNA-binding protein	NA
UHGV-0081704_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0081704_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0081704_13	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0081704_14	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0081704_14	UniRef90	UniRef90_A0A1C6ER71	Superfamily II helicase and inactivated derivatives	NA
UHGV-0081704_14	eggNOG-mapper	1007096.BAGW01000023_gene149	NA	NA
UHGV-0081704_14	Pfam	PF06048	NA	DUF927
UHGV-0081704_14	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0081704_14	COG	COG5519	NA	NA
UHGV-0081704_16	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0081704_16	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0081704_16	UniRef90	UniRef90_R7GSU9	DNA or RNA helicases of superfamily II	NA
UHGV-0081704_16	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0081704_16	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0081704_16	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0081704_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0081704_16	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0081704_16	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0081704_17	PHROG	phrog_824	NA	unknown function
UHGV-0081704_17	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0081704_17	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0081704_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0081704_17	Structural annotation	PF08774	NA	NA
UHGV-0081704_22	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0081704_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0081704_23	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0081704_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0081704_23	Structural annotation	PF16677	NA	NA
UHGV-0081704_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081704_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0081704_24	UniRef90	UniRef90_A0A373XSH6	Terminase	NA
UHGV-0081704_24	eggNOG-mapper	1282664.H354_06621	Phage terminase, large subunit, PBSX family	NA
UHGV-0081704_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081704_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0081704_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0081704_25	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0081704_25	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0081704_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0081704_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0081704_26	UniRef90	UniRef90_UPI0018AA82F0	minor capsid protein	NA
UHGV-0081704_26	eggNOG-mapper	1304866.K413DRAFT_0809	Phage minor capsid protein 2	NA
UHGV-0081704_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0081704_26	COG	COG2369	NA	NA
UHGV-0081704_27	PHROG	phrog_15041	NA	unknown function
UHGV-0081704_27	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0081704_27	Structural annotation	PF10827	NA	NA
UHGV-0081704_28	PHROG	phrog_3675	NA	unknown function
UHGV-0081704_28	UniRef90	UniRef90_UPI001C39FC9B	YjcQ family protein	NA
UHGV-0081704_28	eggNOG-mapper	1235796.C815_00922	YjcQ protein	NA
UHGV-0081704_28	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0081704_28	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0081704_29	PHROG	phrog_774	NA	unknown function
UHGV-0081704_29	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0081704_30	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0081704_30	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0081704_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0081704_31	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-0081704_31	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0081704_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0081704_32	PHROG	phrog_1378	NA	unknown function
UHGV-0081704_32	eggNOG-mapper	1298920.KI911353_gene4849	NA	NA
UHGV-0081704_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0081704_33	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0081704_34	PHROG	phrog_8710	NA	unknown function
UHGV-0081704_34	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0081704_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0081704_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0081704_35	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0081704_36	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0081704_36	UniRef90	UniRef90_UPI0003F673FD	minor capsid protein	NA
UHGV-0081704_36	eggNOG-mapper	33035.JPJF01000093_gene2247	NA	NA
UHGV-0081704_36	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0081704_36	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0081704_37	PHROG	phrog_820	major tail protein	tail
UHGV-0081704_37	eggNOG-mapper	1507.HMPREF0262_01184	domain, Protein	NA
UHGV-0081704_37	COG	COG5492	NA	NA
UHGV-0081704_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0081704_38	PHROG	phrog_8300	NA	unknown function
UHGV-0081704_38	eggNOG-mapper	1122918.KB907248_gene4491	NA	NA
UHGV-0081704_38	Structural annotation	PF06896	NA	NA
UHGV-0081704_39	PHROG	phrog_8355	NA	unknown function
UHGV-0081704_39	UniRef90	UniRef90_A0A1M6RZ32	Bacteriophage Gp15 protein	NA
UHGV-0081704_39	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-0081704_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0081704_39	Structural annotation	PF06854	NA	NA
UHGV-0081704_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0081704_40	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0081704_40	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0081704_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0081704_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0081704_41	PHROG	phrog_1194	NA	unknown function
UHGV-0081704_41	eggNOG-mapper	1415775.U729_2615	NA	NA
UHGV-0081704_41	Pfam	PF20458	NA	DUF6711
UHGV-0081704_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0081704_42	PHROG	phrog_23052	NA	unknown function
UHGV-0081704_42	eggNOG-mapper	946235.CAER01000065_gene2433	NA	NA
UHGV-0081704_42	Structural annotation	PF05954, PF16532, NF033848, COG3500	NA	NA
UHGV-0081704_43	PHROG	phrog_19291	NA	unknown function
UHGV-0081704_43	eggNOG-mapper	1232449.BAHV02000021_gene1072	NA	NA
UHGV-0081704_43	Structural annotation	PF02191, COG3823	NA	NA
UHGV-0081704_44	eggNOG-mapper	411473.RUMCAL_00420	nuclear chromosome segregation	NA
UHGV-0081704_44	COG	COG1196	Chromosome segregation ATPase Smc	NA