UHGV-0081732

Genome information

Genome length 35,903 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081732
vOTU ID	vOTU-011149
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_138316
BioSample	SAMEA2737653
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.69
Jumbo phage	No

Genome content
Genome length	35,903 bps
GC content	39.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.89%
Average CDS length	547.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081732_1	PHROG	phrog_419	NA	unknown function
UHGV-0081732_1	UniRef90	UniRef90_UPI001CF863AC	PGDYG domain-containing protein	NA
UHGV-0081732_1	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0081732_1	Structural annotation	PF14083	NA	NA
UHGV-0081732_2	PHROG	phrog_7395	NA	unknown function
UHGV-0081732_2	UniRef90	UniRef90_UPI001899066E	NA	NA
UHGV-0081732_2	eggNOG-mapper	886882.PPSC2_c2958	NA	NA
UHGV-0081732_2	Pfam	PF14015	NA	DUF4231
UHGV-0081732_2	NCBIFam	NF033634.1	SLATT domain-containing protein	NA
UHGV-0081732_2	Structural annotation	PF14015, NF033634	NA	NA
UHGV-0081732_4	PHROG	phrog_16228	NA	unknown function
UHGV-0081732_4	UniRef90	UniRef90_UPI001570061B	Uma2 family endonuclease	NA
UHGV-0081732_4	eggNOG-mapper	500632.CLONEX_01584	Putative restriction endonuclease	NA
UHGV-0081732_4	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0081732_4	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0081732_4	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0081732_6	PHROG	phrog_87	metallo-protease	other
UHGV-0081732_6	UniRef90	UniRef90_A0A3E5EK41	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0081732_6	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0081732_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0081732_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0081732_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0081732_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0081732_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081732_7	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0081732_7	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0081732_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0081732_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081732_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081732_7	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0081732_8	UniRef90	UniRef90_UPI001EE0CE96	helix-turn-helix domain-containing protein	NA
UHGV-0081732_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0081732_11	eggNOG-mapper	411468.CLOSCI_01459	NA	NA
UHGV-0081732_12	PHROG	phrog_750	NA	unknown function
UHGV-0081732_12	eggNOG-mapper	97139.C824_00051	NA	NA
UHGV-0081732_12	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0081732_14	PHROG	phrog_9607	NA	unknown function
UHGV-0081732_14	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0081732_14	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0081732_17	PHROG	phrog_32342	NA	unknown function
UHGV-0081732_18	PHROG	phrog_7566	NA	unknown function
UHGV-0081732_18	UniRef90	UniRef90_A0A414QES0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0081732_18	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0081732_19	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0081732_19	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0081732_20	PHROG	phrog_1029	NA	unknown function
UHGV-0081732_20	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0081732_20	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0081732_21	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0081732_21	UniRef90	UniRef90_R6S5E8	NA	NA
UHGV-0081732_21	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0081732_21	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0081732_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0081732_21	Structural annotation	PF14297	NA	NA
UHGV-0081732_22	PHROG	phrog_15077	NA	unknown function
UHGV-0081732_22	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0081732_22	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0081732_22	Structural annotation	NF038070	NA	NA
UHGV-0081732_23	PHROG	phrog_26445	NA	unknown function
UHGV-0081732_23	UniRef90	UniRef90_A0A414QER8	Sigma70_r4_2 domain-containing protein	NA
UHGV-0081732_23	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0081732_23	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0081732_26	PHROG	phrog_32748	NA	unknown function
UHGV-0081732_26	eggNOG-mapper	411461.DORFOR_01147	COG NOG28949 non supervised orthologous group	NA
UHGV-0081732_26	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0081732_27	PHROG	phrog_31991	NA	unknown function
UHGV-0081732_28	PHROG	phrog_38110	NA	unknown function
UHGV-0081732_29	PHROG	phrog_7024	NA	unknown function
UHGV-0081732_29	eggNOG-mapper	1499685.CCFJ01000014_gene1391	NA	NA
UHGV-0081732_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0081732_30	UniRef90	UniRef90_R6S8T9	Sigma70_r4 domain-containing protein	NA
UHGV-0081732_30	eggNOG-mapper	1280698.AUJS01000007_gene1031	NA	NA
UHGV-0081732_30	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0081732_30	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0081732_31	PHROG	phrog_11520	NA	unknown function
UHGV-0081732_31	eggNOG-mapper	1209989.TepiRe1_1148	NA	NA
UHGV-0081732_31	Structural annotation	PF14337	NA	NA
UHGV-0081732_34	UniRef90	UniRef90_A0A1Y4H070	Chemotaxis protein	NA
UHGV-0081732_34	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0081732_34	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0081732_35	UniRef90	UniRef90_A0A412UTE1	HNH endonuclease	NA
UHGV-0081732_35	eggNOG-mapper	1232446.BAIE02000002_gene820	HNH nucleases	NA
UHGV-0081732_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0081732_36	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0081732_36	UniRef90	UniRef90_UPI001A918125	P27 family phage terminase small subunit	NA
UHGV-0081732_36	eggNOG-mapper	913865.DOT_5637	phage terminase small subunit	NA
UHGV-0081732_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0081732_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0081732_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0081732_37	UniRef90	UniRef90_A0A3E5GPH3	Terminase large subunit	NA
UHGV-0081732_37	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-0081732_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0081732_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0081732_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0081732_37	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0081732_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0081732_38	UniRef90	UniRef90_A0A3E5GPS9	Phage portal protein	NA
UHGV-0081732_38	eggNOG-mapper	1232446.BAIE02000002_gene824	Phage portal protein, HK97 family	NA
UHGV-0081732_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0081732_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0081732_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0081732_38	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0081732_39	KOfam	K06904	NA	NA
UHGV-0081732_39	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0081732_39	UniRef90	UniRef90_A0A3E5GPG5	HK97 family phage prohead protease	NA
UHGV-0081732_39	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0081732_39	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0081732_39	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0081732_39	COG	COG3740	Phage head maturation protease	NA
UHGV-0081732_39	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0081732_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0081732_40	UniRef90	UniRef90_A0A3E5GPH2	Phage major capsid protein	NA
UHGV-0081732_40	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-0081732_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0081732_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0081732_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0081732_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0081732_41	PHROG	phrog_2550	NA	unknown function
UHGV-0081732_41	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-0081732_41	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0081732_42	PHROG	phrog_19734	NA	unknown function
UHGV-0081732_42	UniRef90	UniRef90_A0A3E5GR03	Head-tail adaptor protein	NA
UHGV-0081732_42	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0081732_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0081732_43	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0081732_43	Structural annotation	PF05657	NA	NA
UHGV-0081732_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0081732_44	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0081732_44	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-0081732_44	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0081732_44	Structural annotation	TIGR01725	NA	NA
UHGV-0081732_45	PHROG	phrog_88	major tail protein	tail
UHGV-0081732_45	UniRef90	UniRef90_A0A3E5GPH8	Phage tail protein	NA
UHGV-0081732_45	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0081732_45	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0081732_46	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-0081732_46	Structural annotation	PF11836	NA	NA
UHGV-0081732_47	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0081732_47	UniRef90	UniRef90_A0A3E5GPN2	PhageMin_Tail domain-containing protein	NA
UHGV-0081732_47	eggNOG-mapper	1235798.C817_04592	Phage-related minor tail protein	NA
UHGV-0081732_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0081732_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0081732_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0081732_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0081732_48	UniRef90	UniRef90_A0A3E5GPI4	Phage tail protein	NA
UHGV-0081732_48	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0081732_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0081732_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0081732_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0081732_49	PHROG	phrog_13289	tail protein	tail
UHGV-0081732_49	UniRef90	UniRef90_R9MV22	Phage minor structural protein	NA
UHGV-0081732_49	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0081732_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081732_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0081732_49	COG	COG4926	Phage-related protein	NA
UHGV-0081732_51	PHROG	phrog_16164	NA	unknown function
UHGV-0081732_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0081732_54	eggNOG-mapper	871968.DESME_01095	NA	NA
UHGV-0081732_55	PHROG	phrog_3675	NA	unknown function
UHGV-0081732_55	UniRef90	UniRef90_A0A1M5QX12	YjcQ protein	NA
UHGV-0081732_55	eggNOG-mapper	1507.HMPREF0262_00644	YjcQ protein	NA
UHGV-0081732_55	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0081732_55	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0081732_57	PHROG	phrog_1009	NA	unknown function
UHGV-0081732_57	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0081732_57	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0081732_58	PHROG	phrog_1129	holin	lysis
UHGV-0081732_58	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0081732_58	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0081732_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0081732_58	Structural annotation	PF06946	NA	NA
UHGV-0081732_60	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0081732_60	PHROG	phrog_435	endolysin	lysis
UHGV-0081732_60	UniRef90	UniRef90_A0A1C5SUS3	N-acetylmuramoyl-L-alanine amidase CwlD	NA
UHGV-0081732_60	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0081732_60	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0081732_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0081732_60	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA