UHGV-0081888

Genome information

Genome length 24,619 bps

CDS count 43

Completeness 59.03% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081888
vOTU ID	vOTU-029701
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146853
BioSample	SAMEA2737672
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.03% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.98
Jumbo phage	No

Genome content
Genome length	24,619 bps
GC content	42.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.04%
Average CDS length	518.44 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081888_2	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0081888_2	Structural annotation	NF040910	NA	NA
UHGV-0081888_3	eggNOG-mapper	397291.C804_01089	NA	NA
UHGV-0081888_3	Pfam	PF20712	Cyanobacterial TRADD-N associated 2-Transmembrane domain	CyanoTRADDas_TM
UHGV-0081888_4	PHROG	phrog_4105	NA	unknown function
UHGV-0081888_4	eggNOG-mapper	521003.COLINT_02361	NA	NA
UHGV-0081888_5	PHROG	phrog_443	holin	lysis
UHGV-0081888_5	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0081888_5	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0081888_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0081888_5	Structural annotation	PF16945	NA	NA
UHGV-0081888_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0081888_6	PHROG	phrog_435	endolysin	lysis
UHGV-0081888_6	UniRef90	UniRef90_A0A173UCF2	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0081888_6	eggNOG-mapper	1232447.BAHW02000005_gene156	Cell wall hydrolase autolysin	NA
UHGV-0081888_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0081888_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0081888_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0081888_7	KOfam	K14059	int; integrase	NA
UHGV-0081888_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0081888_7	UniRef90	UniRef90_A0A6L5YM13	Tyrosine-type recombinase/integrase	NA
UHGV-0081888_7	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-0081888_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0081888_7	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0081888_8	UniRef90	UniRef90_A0A1Q6L0U5	SHOCT domain-containing protein	NA
UHGV-0081888_8	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0081888_8	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0081888_8	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0081888_9	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0081888_9	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0081888_9	UniRef90	UniRef90_A0A143XQ54	DNA translocase FtsK	NA
UHGV-0081888_9	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0081888_9	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0081888_9	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0081888_9	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0081888_9	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0081888_9	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0081888_10	PHROG	phrog_87	metallo-protease	other
UHGV-0081888_10	UniRef90	UniRef90_A0A3R6GQR1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0081888_10	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0081888_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0081888_10	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0081888_10	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0081888_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081888_11	UniRef90	UniRef90_A0A414RMQ9	XRE family transcriptional regulator	NA
UHGV-0081888_11	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0081888_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081888_11	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0081888_11	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0081888_12	UniRef90	UniRef90_R6SPV6	DNA binding domain excisionase family	NA
UHGV-0081888_12	eggNOG-mapper	610130.Closa_1362	Helix-turn-helix domain	NA
UHGV-0081888_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0081888_12	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0081888_12	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0081888_15	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0081888_15	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0081888_18	Structural annotation	PF00412	NA	NA
UHGV-0081888_19	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0081888_19	UniRef90	UniRef90_UPI00020DA31D	NA	NA
UHGV-0081888_19	eggNOG-mapper	411490.ANACAC_00805	NA	NA
UHGV-0081888_19	Pfam	PF06378	NA	DUF1071
UHGV-0081888_19	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0081888_20	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0081888_20	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0081888_21	PHROG	phrog_7566	NA	unknown function
UHGV-0081888_21	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0081888_21	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0081888_23	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0081888_23	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0081888_23	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0081888_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0081888_23	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0081888_24	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0081888_24	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0081888_24	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0081888_24	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0081888_25	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0081888_25	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0081888_25	UniRef90	UniRef90_UPI000E81B795	ATP-binding protein	NA
UHGV-0081888_25	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0081888_25	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0081888_25	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0081888_25	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0081888_26	PHROG	phrog_8684	NA	unknown function
UHGV-0081888_26	UniRef90	UniRef90_C7GC23	YopX domain-containing protein	NA
UHGV-0081888_26	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0081888_26	Pfam	PF09643	YopX protein	YopX
UHGV-0081888_28	PHROG	phrog_874	NA	unknown function
UHGV-0081888_28	UniRef90	UniRef90_C4IFC5	Upf86.8	NA
UHGV-0081888_28	eggNOG-mapper	632245.CLP_1629	NA	NA
UHGV-0081888_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0081888_31	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0081888_31	UniRef90	UniRef90_A0A6L6XJP0	Radical SAM protein	NA
UHGV-0081888_31	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0081888_31	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0081888_31	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0081888_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0081888_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0081888_32	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0081888_32	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0081888_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0081888_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0081888_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0081888_32	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0081888_34	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0081888_34	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0081888_34	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0081888_34	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0081888_34	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0081888_34	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0081888_34	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0081888_34	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0081888_35	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0081888_35	PHROG	phrog_1	integrase	integration and excision
UHGV-0081888_35	UniRef90	UniRef90_UPI001C034698	tyrosine-type recombinase/integrase	NA
UHGV-0081888_35	eggNOG-mapper	1158614.I592_01096	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0081888_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0081888_35	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0081888_35	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0081888_36	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0081888_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0081888_37	PHROG	phrog_3502	NA	unknown function
UHGV-0081888_37	UniRef90	UniRef90_A0A374HT58	LexA_DNA_bind domain-containing protein	NA
UHGV-0081888_37	eggNOG-mapper	43989.cce_5074	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0081888_37	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0081888_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0081888_37	Structural annotation	PF01726, MF_00732, NF000243, COG1321	NA	NA
UHGV-0081888_39	PHROG	phrog_33130	NA	unknown function
UHGV-0081888_39	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0081888_39	Structural annotation	PF10922	NA	NA
UHGV-0081888_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081888_41	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0081888_41	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0081888_41	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0081888_41	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0081888_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0081888_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081888_41	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0081888_42	PHROG	phrog_1233	NA	unknown function
UHGV-0081888_42	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0081888_42	eggNOG-mapper	357809.Cphy_2967	NA	NA