UHGV-0081896

Genome information

Genome length 39,715 bps

CDS count 68

Completeness 94.12% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081896
vOTU ID	vOTU-066383
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_145338
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.85
Jumbo phage	No

Genome content
Genome length	39,715 bps
GC content	53.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.28%
Average CDS length	531.22 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081896_1	PHROG	phrog_16304	NA	unknown function
UHGV-0081896_1	UniRef90	UniRef90_A0A1V5XBX3	NA	NA
UHGV-0081896_1	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0081896_1	Pfam	PF19808	NA	DUF6291
UHGV-0081896_1	Structural annotation	PF19808	NA	NA
UHGV-0081896_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0081896_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0081896_2	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0081896_2	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0081896_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0081896_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0081896_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0081896_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0081896_2	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0081896_3	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0081896_3	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0081896_3	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0081896_3	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0081896_5	Structural annotation	PF06718	NA	NA
UHGV-0081896_9	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0081896_10	PHROG	phrog_4433	NA	unknown function
UHGV-0081896_10	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0081896_10	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0081896_11	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0081896_11	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0081896_11	UniRef90	UniRef90_UPI00137B411D	ORF6C domain-containing protein	NA
UHGV-0081896_11	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0081896_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0081896_11	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0081896_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0081896_11	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0081896_12	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-0081896_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081896_12	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0081896_13	UniRef90	UniRef90_UPI001CBE4822	helix-turn-helix domain-containing protein	NA
UHGV-0081896_13	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0081896_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081896_13	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0081896_13	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0081896_14	Pfam	PF09106	Elongation factor SelB, winged helix	SelB-wing_2
UHGV-0081896_14	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0081896_17	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0081896_17	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0081896_17	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0081896_17	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0081896_17	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0081896_17	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0081896_17	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0081896_20	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0081896_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081896_20	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0081896_21	KOfam	K14059	int; integrase	NA
UHGV-0081896_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0081896_21	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0081896_21	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0081896_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0081896_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0081896_21	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0081896_23	Structural annotation	PF12510	NA	NA
UHGV-0081896_24	PHROG	phrog_20016	NA	unknown function
UHGV-0081896_24	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0081896_24	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0081896_24	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0081896_25	PHROG	phrog_16490	NA	unknown function
UHGV-0081896_25	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0081896_26	PHROG	phrog_22984	NA	unknown function
UHGV-0081896_27	PHROG	phrog_21718	NA	unknown function
UHGV-0081896_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0081896_28	PHROG	phrog_3754	NA	unknown function
UHGV-0081896_28	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0081896_31	eggNOG-mapper	1033733.CAEK01000007_gene1628	NA	NA
UHGV-0081896_31	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0081896_32	PHROG	phrog_5765	NA	unknown function
UHGV-0081896_32	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0081896_32	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0081896_32	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0081896_33	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0081896_34	PHROG	phrog_15303	NA	unknown function
UHGV-0081896_35	PHROG	phrog_1863	NA	unknown function
UHGV-0081896_35	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0081896_36	KOfam	K07273	acm; lysozyme	NA
UHGV-0081896_36	PHROG	phrog_291	endolysin	lysis
UHGV-0081896_36	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0081896_36	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0081896_36	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0081896_36	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0081896_36	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0081896_38	PHROG	phrog_3558	tail protein	tail
UHGV-0081896_38	UniRef90	UniRef90_A0A8B3ALT8	Prophage_tail domain-containing protein	NA
UHGV-0081896_38	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0081896_38	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0081896_38	COG	COG4926	Phage-related protein	NA
UHGV-0081896_38	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0081896_39	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0081896_39	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0081896_39	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0081896_40	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0081896_40	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0081896_40	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0081896_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0081896_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0081896_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0081896_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0081896_42	PHROG	phrog_885	major tail protein	tail
UHGV-0081896_42	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0081896_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0081896_43	Structural annotation	PF13554	NA	NA
UHGV-0081896_44	PHROG	phrog_17977	NA	unknown function
UHGV-0081896_44	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0081896_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0081896_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0081896_46	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0081896_46	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0081896_46	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0081896_47	Structural annotation	PF06810	NA	NA
UHGV-0081896_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0081896_49	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0081896_49	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0081896_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0081896_51	PHROG	phrog_8680	NA	unknown function
UHGV-0081896_51	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0081896_51	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0081896_51	Pfam	PF14386	NA	DUF4417
UHGV-0081896_51	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0081896_51	Structural annotation	PF14386	NA	NA
UHGV-0081896_53	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0081896_53	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0081896_53	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0081896_53	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0081896_53	COG	COG2369	NA	NA
UHGV-0081896_53	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0081896_55	PHROG	phrog_64	portal protein	head and packaging
UHGV-0081896_55	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0081896_55	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0081896_55	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0081896_55	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0081896_56	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081896_56	PHROG	phrog_10250	NA	unknown function
UHGV-0081896_56	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0081896_56	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0081896_56	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0081896_56	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0081896_56	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0081896_56	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081896_56	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0081896_57	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0081896_57	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0081896_57	Structural annotation	PF04218	NA	NA
UHGV-0081896_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0081896_58	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0081896_59	Structural annotation	PF15188	NA	NA
UHGV-0081896_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0081896_60	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0081896_60	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0081896_60	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0081896_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0081896_60	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0081896_60	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0081896_61	PHROG	phrog_3136	NA	unknown function
UHGV-0081896_61	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0081896_61	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0081896_61	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0081896_61	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0081896_63	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0081896_63	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0081896_63	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0081896_63	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0081896_64	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0081896_64	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0081896_64	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0081896_64	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0081896_66	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0081896_67	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0081896_68	Structural annotation	PF11417	NA	NA