UHGV-0081961

Genome information

vOTU vOTU-019181

Genome length 34,605 bps

CDS count 50

Completeness 83.61% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0081961
vOTU ID	vOTU-019181
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158049
BioSample	SAMEA2784474
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.36
Jumbo phage	No

Genome content
Genome length	34,605 bps
GC content	41.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.91%
Average CDS length	638.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0081961_1	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0081961_1	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0081961_2	PHROG	phrog_6616	tail protein	tail
UHGV-0081961_2	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0081961_2	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0081961_2	COG	COG4926	Phage-related protein	NA
UHGV-0081961_2	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0081961_3	PHROG	phrog_1401	NA	unknown function
UHGV-0081961_3	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0081961_3	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0081961_3	Structural annotation	PF07761	NA	NA
UHGV-0081961_4	PHROG	phrog_1194	NA	unknown function
UHGV-0081961_4	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0081961_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0081961_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0081961_5	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0081961_5	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0081961_5	COG	COG5412	Phage-related protein	NA
UHGV-0081961_6	eggNOG-mapper	445974.CLORAM_02922	NA	NA
UHGV-0081961_7	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0081961_7	UniRef90	UniRef90_UPI001EE8B5C4	NA	NA
UHGV-0081961_7	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0081961_7	Structural annotation	PF19591	NA	NA
UHGV-0081961_8	PHROG	phrog_158	major tail protein	tail
UHGV-0081961_8	UniRef90	UniRef90_UPI0016452D03	phage tail protein	NA
UHGV-0081961_8	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0081961_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0081961_9	PHROG	phrog_78	tail terminator	connector
UHGV-0081961_9	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0081961_9	Structural annotation	PF05657	NA	NA
UHGV-0081961_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0081961_10	UniRef90	UniRef90_UPI001645FB65	HK97 gp10 family phage protein	NA
UHGV-0081961_10	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0081961_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0081961_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0081961_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0081961_11	PHROG	phrog_2168	NA	unknown function
UHGV-0081961_11	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0081961_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0081961_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0081961_12	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-0081961_12	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0081961_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0081961_12	Structural annotation	PF05135	NA	NA
UHGV-0081961_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0081961_13	UniRef90	UniRef90_UPI00156DFF0E	coat protein	NA
UHGV-0081961_13	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0081961_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0081961_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0081961_14	UniRef90	UniRef90_UPI001D01F670	NA	NA
UHGV-0081961_14	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0081961_14	Pfam	PF14265	NA	DUF4355
UHGV-0081961_14	Structural annotation	PF14265	NA	NA
UHGV-0081961_15	Structural annotation	PF01281	NA	NA
UHGV-0081961_16	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0081961_16	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0081961_16	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0081961_17	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0081961_17	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0081961_17	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0081961_17	Pfam	PF14359	NA	DUF4406
UHGV-0081961_17	Structural annotation	PF14359	NA	NA
UHGV-0081961_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0081961_19	UniRef90	UniRef90_A0A1C5VLG6	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0081961_19	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0081961_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0081961_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0081961_19	COG	COG2369	NA	NA
UHGV-0081961_19	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0081961_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0081961_20	UniRef90	UniRef90_A0A173WMA1	Phage portal protein, SPP1 family	NA
UHGV-0081961_20	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0081961_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0081961_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0081961_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0081961_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0081961_21	PHROG	phrog_10250	NA	unknown function
UHGV-0081961_21	UniRef90	UniRef90_A0A173WM22	Phage terminase, large subunit, PBSX family	NA
UHGV-0081961_21	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0081961_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0081961_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0081961_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0081961_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0081961_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0081961_22	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0081961_22	UniRef90	UniRef90_A0A564VY60	ATPase subunit of terminase (GpP-like)	NA
UHGV-0081961_22	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0081961_22	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0081961_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0081961_22	COG	COG5484	NA	NA
UHGV-0081961_22	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0081961_23	eggNOG-mapper	610130.Closa_1386	NA	NA
UHGV-0081961_23	Structural annotation	PF15968	NA	NA
UHGV-0081961_24	eggNOG-mapper	610130.Closa_1385	NA	NA
UHGV-0081961_24	Structural annotation	PF20505	NA	NA
UHGV-0081961_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0081961_25	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0081961_25	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0081961_25	Structural annotation	PF04545	NA	NA
UHGV-0081961_26	PHROG	phrog_19011	NA	unknown function
UHGV-0081961_26	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0081961_28	eggNOG-mapper	760568.Desku_0913	NA	NA
UHGV-0081961_30	PHROG	phrog_17690	NA	unknown function
UHGV-0081961_30	eggNOG-mapper	476272.RUMHYD_03925	NA	NA
UHGV-0081961_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0081961_32	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0081961_32	UniRef90	UniRef90_A0A414EG57	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0081961_32	eggNOG-mapper	1235792.C808_05386	Endodeoxyribonuclease RusA	NA
UHGV-0081961_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0081961_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0081961_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0081961_33	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0081961_33	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0081961_33	UniRef90	UniRef90_A0A174B086	Primase C terminal 2 (PriCT-2)	NA
UHGV-0081961_33	eggNOG-mapper	411462.DORLON_00808	Primase C terminal 2 (PriCT-2)	NA
UHGV-0081961_33	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0081961_33	Pfam	PF13481	AAA domain	AAA_25
UHGV-0081961_33	COG	COG3598	RecA-family ATPase	NA
UHGV-0081961_33	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0081961_34	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0081961_34	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0081961_34	UniRef90	UniRef90_UPI001C0EDFF6	DEAD/DEAH box helicase family protein	NA
UHGV-0081961_34	eggNOG-mapper	411462.DORLON_00809	helicase superfamily c-terminal domain	NA
UHGV-0081961_34	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0081961_34	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0081961_34	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0081961_34	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0081961_34	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0081961_35	PHROG	phrog_2698	NA	unknown function
UHGV-0081961_35	UniRef90	UniRef90_A0A414EG49	NA	NA
UHGV-0081961_35	eggNOG-mapper	478749.BRYFOR_07585	NA	NA
UHGV-0081961_35	Pfam	PF05037	NA	DUF669
UHGV-0081961_35	Structural annotation	PF05037	NA	NA
UHGV-0081961_36	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0081961_36	UniRef90	UniRef90_UPI001C0F250F	AAA family ATPase	NA
UHGV-0081961_36	eggNOG-mapper	411462.DORLON_00811	AAA domain	NA
UHGV-0081961_36	Pfam	PF13479	AAA domain	AAA_24
UHGV-0081961_36	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0081961_37	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0081961_37	PHROG	phrog_1499	NA	unknown function
UHGV-0081961_37	UniRef90	UniRef90_A0A414EG91	Chromosome segregation protein SMC	NA
UHGV-0081961_37	eggNOG-mapper	610130.Closa_1366	domain protein	NA
UHGV-0081961_37	Pfam	PF13476	AAA domain	AAA_23
UHGV-0081961_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0081961_37	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0081961_40	UniRef90	UniRef90_UPI0015705952	toxin HipA	NA
UHGV-0081961_40	eggNOG-mapper	478749.BRYFOR_05417	NA	NA
UHGV-0081961_42	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0081961_42	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-0081961_42	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0081961_42	Structural annotation	COG2250	NA	NA
UHGV-0081961_44	PHROG	phrog_9188	NA	unknown function
UHGV-0081961_44	UniRef90	UniRef90_A0A316PYR3	Adenylate kinase	NA
UHGV-0081961_44	Structural annotation	PF11023	NA	NA
UHGV-0081961_46	UniRef90	UniRef90_A0A414SEP7	XRE family transcriptional regulator	NA
UHGV-0081961_46	eggNOG-mapper	97139.C824_00056	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0081961_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081961_46	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0081961_47	UniRef90	UniRef90_A0A6N9LK73	XRE family transcriptional regulator	NA
UHGV-0081961_47	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0081961_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0081961_47	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0081961_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0081961_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0081961_48	UniRef90	UniRef90_UPI000CF907E9	helix-turn-helix domain-containing protein	NA
UHGV-0081961_48	eggNOG-mapper	1262449.CP6013_3167	Helix-turn-helix domain protein	NA
UHGV-0081961_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0081961_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0081961_48	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0081961_49	PHROG	phrog_14333	NA	unknown function
UHGV-0081961_49	UniRef90	UniRef90_UPI001F16307B	NA	NA
UHGV-0081961_49	eggNOG-mapper	457412.RSAG_01053	NA	NA
UHGV-0081961_49	Pfam	PF13711	NA	DUF4160
UHGV-0081961_50	PHROG	phrog_37898	NA	unknown function
UHGV-0081961_50	UniRef90	UniRef90_A0A8I0A9U4	NA	NA
UHGV-0081961_50	eggNOG-mapper	877414.ATWA01000082_gene1189	NA	NA
UHGV-0081961_50	Pfam	PF10387	NA	DUF2442
UHGV-0081961_50	Structural annotation	PF10387	NA	NA