UHGV-0082044

Genome information

Genome length 15,708 bps

CDS count 22

Completeness 69.64% (medium-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082044
vOTU ID	vOTU-032265
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_153189
BioSample	SAMEA2784501
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.48
Jumbo phage	No

Genome content
Genome length	15,708 bps
GC content	24.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	91.94%
Average CDS length	657.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082044_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0082044_7	UniRef90	UniRef90_A0A843GV47	Phage DNA encapsidation protein	NA
UHGV-0082044_7	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0082044_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0082044_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0082044_8	PHROG	phrog_13481	tail fiber protein	tail
UHGV-0082044_8	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0082044_10	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0082044_10	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0082044_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0082044_11	UniRef90	UniRef90_P04332	Portal protein	NA
UHGV-0082044_11	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0082044_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0082044_11	Structural annotation	PF05352, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-0082044_12	PHROG	phrog_2248	tail protein	tail
UHGV-0082044_12	UniRef90	UniRef90_A0A843GZQ7	Caud_tail_N domain-containing protein	NA
UHGV-0082044_12	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0082044_12	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0082044_12	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0082044_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0082044_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0082044_13	UniRef90	UniRef90_A0A843GUE7	Ig-like domain-containing protein	NA
UHGV-0082044_13	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0082044_13	Structural annotation	PF19821, PF18957, MF_04119, TIGR04387, NF038186, COG4834	NA	NA
UHGV-0082044_15	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0082044_15	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0082044_15	UniRef90	UniRef90_D7C151	Secreted peptidase	NA
UHGV-0082044_15	eggNOG-mapper	749414.SBI_04832	Peptidase family M23	NA
UHGV-0082044_15	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0082044_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0082044_15	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0082044_16	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0082044_16	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0082044_16	UniRef90	UniRef90_A0A2V2DY12	SLH domain-containing protein	NA
UHGV-0082044_16	eggNOG-mapper	1157637.KB892124_gene674	domain protein	NA
UHGV-0082044_16	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0082044_16	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0082044_16	Structural annotation	PF01551, PF08239, NF040883, COG0739, COG4991	NA	NA
UHGV-0082044_17	PHROG	phrog_199	holin	lysis
UHGV-0082044_17	UniRef90	UniRef90_A0A1H6XM70	Toxin secretion/phage lysis holin	NA
UHGV-0082044_17	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0082044_17	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0082044_17	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0082044_18	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0082044_18	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0082044_18	UniRef90	UniRef90_A0A843GL65	DNA-directed DNA polymerase	NA
UHGV-0082044_18	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0082044_18	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0082044_18	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0082044_19	Structural annotation	PF05435	NA	NA
UHGV-0082044_21	Structural annotation	PF17427	NA	NA