UHGV-0082064

Genome information

Genome length 32,444 bps

CDS count 47

Completeness 86.90% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0082064
vOTU ID	vOTU-018708
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_138358
BioSample	SAMEA2737653
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.12
Jumbo phage	No

Genome content
Genome length	32,444 bps
GC content	58.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.44%
Average CDS length	650.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0082064_1	KOfam	K14059	int; integrase	NA
UHGV-0082064_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0082064_1	UniRef90	UniRef90_A0A417F5S2	Site-specific integrase	NA
UHGV-0082064_1	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0082064_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0082064_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0082064_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0082064_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0082064_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0082064_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0082064_2	UniRef90	UniRef90_A0A417TMN9	BRCT domain-containing protein	NA
UHGV-0082064_2	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0082064_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0082064_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0082064_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0082064_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0082064_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0082064_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082064_4	UniRef90	UniRef90_A0A417HFZ4	XRE family transcriptional regulator	NA
UHGV-0082064_4	eggNOG-mapper	2325.TKV_c21810	Helix-turn-helix XRE-family like proteins	NA
UHGV-0082064_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082064_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0082064_4	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0082064_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0082064_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0082064_5	UniRef90	UniRef90_A0A417HG00	XRE family transcriptional regulator	NA
UHGV-0082064_5	eggNOG-mapper	1007096.BAGW01000035_gene1331	Helix-turn-helix XRE-family like proteins	NA
UHGV-0082064_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0082064_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0082064_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0082064_6	UniRef90	UniRef90_A0A417F5Y8	DNA-binding protein	NA
UHGV-0082064_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0082064_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0082064_7	UniRef90	UniRef90_A0A417F5P6	Transcriptional regulator	NA
UHGV-0082064_7	eggNOG-mapper	537013.CLOSTMETH_01707	Helix-turn-helix XRE-family like proteins	NA
UHGV-0082064_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0082064_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0082064_7	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0082064_10	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0082064_10	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0082064_10	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0082064_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0082064_10	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0082064_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0082064_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0082064_11	UniRef90	UniRef90_A0A416DGZ9	DNA helicase	NA
UHGV-0082064_11	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0082064_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0082064_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0082064_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0082064_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0082064_12	Structural annotation	PF07870	NA	NA
UHGV-0082064_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0082064_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0082064_14	UniRef90	UniRef90_A0A416DGY9	ParA family protein	NA
UHGV-0082064_14	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0082064_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0082064_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0082064_14	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0082064_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0082064_15	PHROG	phrog_27290	NA	unknown function
UHGV-0082064_15	UniRef90	UniRef90_A0A417F5J9	ParB domain-containing protein	NA
UHGV-0082064_15	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0082064_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0082064_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0082064_15	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0082064_16	PHROG	phrog_22543	NA	unknown function
UHGV-0082064_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0082064_17	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0082064_17	Structural annotation	PF01446	NA	NA
UHGV-0082064_18	UniRef90	UniRef90_UPI001314958C	conjugal transfer protein	NA
UHGV-0082064_18	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0082064_19	Structural annotation	PF15188	NA	NA
UHGV-0082064_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0082064_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0082064_20	UniRef90	UniRef90_A0A417FVG7	ParB domain-containing protein	NA
UHGV-0082064_20	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0082064_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0082064_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0082064_20	COG	COG0863	DNA modification methylase	NA
UHGV-0082064_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0082064_21	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0082064_21	UniRef90	UniRef90_A0A415ZGK3	Methyltransferase	NA
UHGV-0082064_21	eggNOG-mapper	742823.HMPREF9465_00950	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0082064_21	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0082064_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0082064_21	COG	COG0863	DNA modification methylase	NA
UHGV-0082064_21	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0082064_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0082064_22	UniRef90	UniRef90_A0A417HFX2	Phage terminase small subunit P27 family	NA
UHGV-0082064_22	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0082064_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0082064_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0082064_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0082064_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0082064_23	PHROG	phrog_474	phosphofructokinase	other
UHGV-0082064_23	UniRef90	UniRef90_A0A3E2XXK5	NA	NA
UHGV-0082064_23	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0082064_23	Pfam	PF19905	NA	DUF6378
UHGV-0082064_23	Structural annotation	PF19905	NA	NA
UHGV-0082064_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0082064_27	UniRef90	UniRef90_A0A3E2XWZ9	Phage portal protein	NA
UHGV-0082064_27	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0082064_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0082064_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0082064_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0082064_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0082064_28	PHROG	phrog_1480	tail sheath	tail
UHGV-0082064_28	UniRef90	UniRef90_A0A416DH06	Phage tail protein	NA
UHGV-0082064_28	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0082064_28	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0082064_28	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0082064_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0082064_29	UniRef90	UniRef90_A0A415ZGH3	Phage major capsid protein	NA
UHGV-0082064_29	eggNOG-mapper	1111454.HMPREF1250_0251	phage major capsid protein, HK97 family	NA
UHGV-0082064_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0082064_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0082064_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0082064_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0082064_30	PHROG	phrog_365	tail protein	tail
UHGV-0082064_30	UniRef90	UniRef90_A0A3E2XWR4	Terminase	NA
UHGV-0082064_30	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0082064_30	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0082064_30	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0082064_31	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0082064_31	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0082064_31	UniRef90	UniRef90_A0A416DH21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0082064_31	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0082064_31	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0082064_31	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0082064_31	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0082064_32	UniRef90	UniRef90_A0A3E2XWS7	Phage gp6-like head-tail connector protein	NA
UHGV-0082064_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0082064_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0082064_33	UniRef90	UniRef90_A0A417F5D6	Head-tail adaptor protein	NA
UHGV-0082064_33	eggNOG-mapper	394503.Ccel_2954	Phage head-tail adaptor	NA
UHGV-0082064_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0082064_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0082064_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0082064_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0082064_34	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0082064_34	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0082064_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0082064_34	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0082064_35	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0082064_36	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0082064_36	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0082064_36	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0082064_38	PHROG	phrog_33680	NA	unknown function
UHGV-0082064_38	UniRef90	UniRef90_R8W0E5	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0082064_38	eggNOG-mapper	1203606.HMPREF1526_01348	phage tail tape measure protein	NA
UHGV-0082064_38	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0082064_38	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0082064_39	PHROG	phrog_23201	NA	unknown function
UHGV-0082064_39	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0082064_39	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0082064_39	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0082064_39	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0082064_40	PHROG	phrog_400	tail protein	tail
UHGV-0082064_40	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0082064_40	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0082064_40	Pfam	PF05257	CHAP domain	CHAP
UHGV-0082064_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0082064_40	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0082064_41	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0082064_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0082064_42	UniRef90	UniRef90_A0A3E2XXG2	Terminase large subunit	NA
UHGV-0082064_42	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0082064_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0082064_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0082064_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0082064_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0082064_43	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0082064_43	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0082064_43	Pfam	PF10934	NA	DUF2634
UHGV-0082064_43	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0082064_43	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0082064_44	PHROG	phrog_6	baseplate protein	tail
UHGV-0082064_44	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0082064_44	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0082064_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0082064_44	COG	COG3299	NA	NA
UHGV-0082064_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0082064_45	PHROG	phrog_521	tail protein	tail
UHGV-0082064_45	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0082064_45	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-0082064_45	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0082064_45	COG	COG3778	NA	NA
UHGV-0082064_45	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0082064_46	Structural annotation	NF012201	NA	NA
UHGV-0082064_47	PHROG	phrog_7809	tail fiber protein	tail